Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00964

Experiment: 3-Hydroxypropionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00963 and H281DRAFT_00964 are separated by 171 nucleotidesH281DRAFT_00964 and H281DRAFT_00965 are separated by 382 nucleotides H281DRAFT_00963: H281DRAFT_00963 - malate synthase, at 1,076,299 to 1,078,470 _00963 H281DRAFT_00964: H281DRAFT_00964 - glc operon protein GlcG, at 1,078,642 to 1,079,046 _00964 H281DRAFT_00965: H281DRAFT_00965 - hypothetical protein, at 1,079,429 to 1,080,313 _00965 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1 2at 1077.768 kb on + strand, within H281DRAFT_00963at 1077.960 kb on - strand, within H281DRAFT_00963at 1078.200 kb on + strand, within H281DRAFT_00963at 1078.203 kb on - strand, within H281DRAFT_00963at 1078.203 kb on - strand, within H281DRAFT_00963at 1078.237 kb on + strand, within H281DRAFT_00963at 1078.238 kb on - strand, within H281DRAFT_00963at 1078.238 kb on - strand, within H281DRAFT_00963at 1078.824 kb on - strand, within H281DRAFT_00964at 1078.880 kb on + strand, within H281DRAFT_00964at 1078.881 kb on - strand, within H281DRAFT_00964at 1078.881 kb on - strand, within H281DRAFT_00964at 1079.150 kb on - strandat 1079.150 kb on - strandat 1079.150 kb on - strandat 1079.340 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
remove
1,077,768 + H281DRAFT_00963 0.68 -0.8
1,077,960 - H281DRAFT_00963 0.76 -2.0
1,078,200 + H281DRAFT_00963 0.88 -1.6
1,078,203 - H281DRAFT_00963 0.88 -2.2
1,078,203 - H281DRAFT_00963 0.88 -1.8
1,078,237 + H281DRAFT_00963 0.89 -1.8
1,078,238 - H281DRAFT_00963 0.89 -1.8
1,078,238 - H281DRAFT_00963 0.89 -2.0
1,078,824 - H281DRAFT_00964 0.45 +0.2
1,078,880 + H281DRAFT_00964 0.59 -1.8
1,078,881 - H281DRAFT_00964 0.59 +0.5
1,078,881 - H281DRAFT_00964 0.59 +0.7
1,079,150 - +1.7
1,079,150 - +1.8
1,079,150 - +1.5
1,079,340 + +0.6

Or see this region's nucleotide sequence