Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00753

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00750 and H281DRAFT_00751 are separated by 48 nucleotidesH281DRAFT_00751 and H281DRAFT_00752 are separated by 162 nucleotidesH281DRAFT_00752 and H281DRAFT_00753 are separated by 205 nucleotidesH281DRAFT_00753 and H281DRAFT_00754 overlap by 41 nucleotides H281DRAFT_00750: H281DRAFT_00750 - hypothetical protein, at 844,597 to 844,977 _00750 H281DRAFT_00751: H281DRAFT_00751 - hypothetical protein, at 845,026 to 845,217 _00751 H281DRAFT_00752: H281DRAFT_00752 - hypothetical protein, at 845,380 to 845,664 _00752 H281DRAFT_00753: H281DRAFT_00753 - Protein of unknown function (DUF1488), at 845,870 to 846,154 _00753 H281DRAFT_00754: H281DRAFT_00754 - Nucleoside-diphosphate-sugar epimerase, at 846,114 to 847,112 _00754 Position (kb) 845 846 847Strain fitness (log2 ratio) -1 0 1at 844.888 kb on + strand, within H281DRAFT_00750at 844.888 kb on + strand, within H281DRAFT_00750at 845.043 kb on + strandat 845.320 kb on + strandat 845.330 kb on - strandat 845.350 kb on - strandat 845.350 kb on - strandat 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strandat 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strand, within H281DRAFT_00752at 845.417 kb on - strand, within H281DRAFT_00752at 845.494 kb on + strand, within H281DRAFT_00752at 845.495 kb on - strandat 845.632 kb on + strand, within H281DRAFT_00752at 845.688 kb on - strandat 845.792 kb on + strandat 845.798 kb on - strandat 845.798 kb on - strandat 845.798 kb on - strandat 845.798 kb on - strandat 846.061 kb on - strand, within H281DRAFT_00753at 846.206 kb on - strandat 846.294 kb on + strand, within H281DRAFT_00754at 846.295 kb on - strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.386 kb on - strand, within H281DRAFT_00754at 846.452 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.505 kb on + strand, within H281DRAFT_00754at 846.529 kb on - strand, within H281DRAFT_00754at 846.576 kb on + strand, within H281DRAFT_00754at 846.613 kb on + strandat 846.766 kb on + strand, within H281DRAFT_00754at 846.767 kb on - strandat 846.869 kb on - strandat 846.886 kb on + strand, within H281DRAFT_00754at 846.887 kb on - strand, within H281DRAFT_00754at 846.923 kb on + strand, within H281DRAFT_00754at 846.923 kb on + strand, within H281DRAFT_00754at 847.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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844,888 + H281DRAFT_00750 0.76 +1.1
844,888 + H281DRAFT_00750 0.76 +0.2
845,043 + -0.2
845,320 + +0.2
845,330 - +0.6
845,350 - +0.0
845,350 - -0.2
845,416 + H281DRAFT_00752 0.13 +0.5
845,416 + +0.4
845,416 + H281DRAFT_00752 0.13 -0.3
845,416 + H281DRAFT_00752 0.13 -0.3
845,416 + H281DRAFT_00752 0.13 -0.2
845,417 - H281DRAFT_00752 0.13 -0.4
845,494 + H281DRAFT_00752 0.40 +0.4
845,495 - -1.5
845,632 + H281DRAFT_00752 0.88 -0.1
845,688 - +0.1
845,792 + +0.3
845,798 - +0.4
845,798 - +0.0
845,798 - -0.1
845,798 - -0.2
846,061 - H281DRAFT_00753 0.67 +0.5
846,206 - +0.6
846,294 + H281DRAFT_00754 0.18 +0.6
846,295 - H281DRAFT_00754 0.18 +0.1
846,385 + H281DRAFT_00754 0.27 +0.7
846,385 + H281DRAFT_00754 0.27 -0.4
846,386 - H281DRAFT_00754 0.27 -0.5
846,452 - H281DRAFT_00754 0.34 -0.6
846,471 - H281DRAFT_00754 0.36 -0.0
846,471 - H281DRAFT_00754 0.36 -0.7
846,471 - H281DRAFT_00754 0.36 -0.5
846,505 + H281DRAFT_00754 0.39 +0.8
846,529 - H281DRAFT_00754 0.42 -0.0
846,576 + H281DRAFT_00754 0.46 +0.7
846,613 + +0.7
846,766 + H281DRAFT_00754 0.65 +0.0
846,767 - +0.8
846,869 - -1.4
846,886 + H281DRAFT_00754 0.77 +0.3
846,887 - H281DRAFT_00754 0.77 +0.3
846,923 + H281DRAFT_00754 0.81 -1.7
846,923 + H281DRAFT_00754 0.81 -0.1
847,118 + +0.2

Or see this region's nucleotide sequence