Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_435 and HP15_436 are separated by 77 nucleotides HP15_436 and HP15_437 are separated by 87 nucleotides HP15_437 and HP15_438 are separated by 23 nucleotides
HP15_435: HP15_435 - glutamate-ammonia-ligase adenylyltransferase, at 435,349 to 438,255
_435
HP15_436: HP15_436 - branched-chain-amino-acid aminotransferase, at 438,333 to 439,259
_436
HP15_437: HP15_437 - conserved hypothetical protein, at 439,347 to 439,754
_437
HP15_438: HP15_438 - lipopolysaccharide biosynthesis protein, at 439,778 to 440,836
_438
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 437.359 kb on + strand, within HP15_435 at 437.378 kb on + strand, within HP15_435 at 437.697 kb on + strand, within HP15_435 at 437.705 kb on - strand, within HP15_435 at 437.705 kb on - strand, within HP15_435 at 437.739 kb on + strand, within HP15_435 at 437.747 kb on - strand, within HP15_435 at 437.801 kb on + strand, within HP15_435 at 437.913 kb on - strand, within HP15_435 at 437.932 kb on - strand, within HP15_435 at 437.989 kb on + strand at 438.023 kb on + strand at 438.036 kb on - strand at 438.188 kb on - strand at 438.195 kb on - strand at 438.216 kb on + strand at 439.065 kb on + strand, within HP15_436 at 439.187 kb on + strand at 439.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 437,359 + HP15_435 0.69 -4.2 437,378 + HP15_435 0.70 -2.5 437,697 + HP15_435 0.81 -3.4 437,705 - HP15_435 0.81 -3.4 437,705 - HP15_435 0.81 -3.5 437,739 + HP15_435 0.82 -4.5 437,747 - HP15_435 0.82 -3.9 437,801 + HP15_435 0.84 -2.1 437,913 - HP15_435 0.88 -2.5 437,932 - HP15_435 0.89 -3.7 437,989 + -2.1 438,023 + -3.7 438,036 - -3.9 438,188 - -0.3 438,195 - -0.1 438,216 + +0.2 439,065 + HP15_436 0.79 -2.1 439,187 + -1.1 439,805 - +0.5
Or see this region's nucleotide sequence