Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3932 and HP15_3933 are separated by 308 nucleotides HP15_3933 and HP15_3934 are separated by 81 nucleotides HP15_3934 and HP15_3935 are separated by 21 nucleotides
HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130
_3932
HP15_3933: HP15_3933 - hypothetical protein, at 4,161,439 to 4,161,600
_3933
HP15_3934: HP15_3934 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,161,682 to 4,163,103
_3934
HP15_3935: HP15_3935 - pyruvate carboxylase subunit B, at 4,163,125 to 4,164,924
_3935
Position (kb) 4161
4162
4163
4164 Strain fitness (log2 ratio) -2
-1
0
1 at 4160.702 kb on + strand, within HP15_3932 at 4160.814 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.935 kb on + strand, within HP15_3932 at 4161.020 kb on + strand, within HP15_3932 at 4161.153 kb on + strand at 4161.272 kb on - strand at 4161.330 kb on - strand at 4161.333 kb on + strand at 4161.460 kb on + strand, within HP15_3933 at 4161.462 kb on - strand, within HP15_3933 at 4161.508 kb on - strand, within HP15_3933 at 4161.539 kb on + strand, within HP15_3933 at 4161.739 kb on - strand at 4161.861 kb on + strand, within HP15_3934 at 4161.873 kb on - strand, within HP15_3934 at 4162.095 kb on + strand, within HP15_3934 at 4162.108 kb on - strand, within HP15_3934 at 4162.246 kb on + strand, within HP15_3934 at 4162.252 kb on + strand, within HP15_3934 at 4162.292 kb on - strand, within HP15_3934 at 4162.455 kb on + strand, within HP15_3934 at 4162.557 kb on + strand, within HP15_3934 at 4162.714 kb on + strand, within HP15_3934 at 4162.769 kb on + strand, within HP15_3934 at 4162.777 kb on - strand, within HP15_3934 at 4162.794 kb on + strand, within HP15_3934 at 4162.986 kb on + strand at 4163.178 kb on + strand at 4163.243 kb on - strand at 4163.244 kb on - strand at 4163.262 kb on - strand at 4163.289 kb on - strand at 4163.389 kb on - strand, within HP15_3935 at 4163.559 kb on + strand, within HP15_3935 at 4163.567 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.652 kb on + strand, within HP15_3935 at 4163.670 kb on - strand, within HP15_3935 at 4163.675 kb on - strand, within HP15_3935 at 4163.684 kb on + strand, within HP15_3935 at 4163.692 kb on - strand, within HP15_3935 at 4163.714 kb on + strand, within HP15_3935 at 4163.771 kb on - strand, within HP15_3935 at 4163.890 kb on - strand, within HP15_3935 at 4163.906 kb on + strand, within HP15_3935 at 4163.914 kb on - strand, within HP15_3935 at 4163.919 kb on + strand, within HP15_3935 at 4163.995 kb on - strand, within HP15_3935 at 4163.997 kb on - strand, within HP15_3935 at 4164.016 kb on - strand, within HP15_3935 at 4164.032 kb on + strand, within HP15_3935 at 4164.041 kb on - strand, within HP15_3935
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 4,160,702 + HP15_3932 0.28 -0.5 4,160,814 + HP15_3932 0.47 -0.1 4,160,839 + HP15_3932 0.51 +1.2 4,160,839 + HP15_3932 0.51 -0.1 4,160,935 + HP15_3932 0.67 -1.2 4,161,020 + HP15_3932 0.81 -0.2 4,161,153 + +0.2 4,161,272 - -0.1 4,161,330 - +0.7 4,161,333 + +0.5 4,161,460 + HP15_3933 0.13 +0.2 4,161,462 - HP15_3933 0.14 -0.1 4,161,508 - HP15_3933 0.43 -2.5 4,161,539 + HP15_3933 0.62 -1.0 4,161,739 - +0.8 4,161,861 + HP15_3934 0.13 -0.4 4,161,873 - HP15_3934 0.13 +0.4 4,162,095 + HP15_3934 0.29 +0.6 4,162,108 - HP15_3934 0.30 -0.8 4,162,246 + HP15_3934 0.40 +0.3 4,162,252 + HP15_3934 0.40 -0.6 4,162,292 - HP15_3934 0.43 -0.4 4,162,455 + HP15_3934 0.54 -0.6 4,162,557 + HP15_3934 0.62 -0.8 4,162,714 + HP15_3934 0.73 -0.5 4,162,769 + HP15_3934 0.76 -2.4 4,162,777 - HP15_3934 0.77 -0.2 4,162,794 + HP15_3934 0.78 -0.6 4,162,986 + -1.1 4,163,178 + -1.0 4,163,243 - +0.4 4,163,244 - +0.1 4,163,262 - -0.7 4,163,289 - +0.3 4,163,389 - HP15_3935 0.15 +0.2 4,163,559 + HP15_3935 0.24 -1.5 4,163,567 - HP15_3935 0.25 -0.4 4,163,615 - HP15_3935 0.27 -1.5 4,163,615 - HP15_3935 0.27 -1.2 4,163,615 - HP15_3935 0.27 -0.5 4,163,652 + HP15_3935 0.29 +0.2 4,163,670 - HP15_3935 0.30 -0.4 4,163,675 - HP15_3935 0.31 -1.1 4,163,684 + HP15_3935 0.31 +1.2 4,163,692 - HP15_3935 0.32 +0.0 4,163,714 + HP15_3935 0.33 -2.0 4,163,771 - HP15_3935 0.36 +1.5 4,163,890 - HP15_3935 0.42 -0.0 4,163,906 + HP15_3935 0.43 +0.4 4,163,914 - HP15_3935 0.44 -1.7 4,163,919 + HP15_3935 0.44 -0.6 4,163,995 - HP15_3935 0.48 -0.7 4,163,997 - HP15_3935 0.48 +0.4 4,164,016 - HP15_3935 0.49 -0.4 4,164,032 + HP15_3935 0.50 -0.8 4,164,041 - HP15_3935 0.51 -0.8
Or see this region's nucleotide sequence