Strain Fitness in Marinobacter adhaerens HP15 around HP15_3928

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3926 and HP15_3927 are separated by 20 nucleotidesHP15_3927 and HP15_3928 are separated by 341 nucleotidesHP15_3928 and HP15_3929 are separated by 10 nucleotides HP15_3926: HP15_3926 - acyl-CoA synthetase, at 4,155,110 to 4,156,774 _3926 HP15_3927: HP15_3927 - protein containing helix-turn-helix type 3 domain, at 4,156,795 to 4,157,160 _3927 HP15_3928: HP15_3928 - acyl-CoA dehydrogenase domain protein, at 4,157,502 to 4,158,638 _3928 HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845 _3929 Position (kb) 4157 4158 4159Strain fitness (log2 ratio) -3 -2 -1 0 1at 4156.503 kb on + strand, within HP15_3926at 4156.600 kb on - strand, within HP15_3926at 4156.633 kb on + strandat 4156.665 kb on + strandat 4156.945 kb on - strand, within HP15_3927at 4157.070 kb on + strand, within HP15_3927at 4157.078 kb on - strand, within HP15_3927at 4157.078 kb on - strand, within HP15_3927at 4157.087 kb on + strand, within HP15_3927at 4157.087 kb on + strand, within HP15_3927at 4157.090 kb on - strand, within HP15_3927at 4157.097 kb on + strand, within HP15_3927at 4157.353 kb on + strandat 4157.413 kb on + strandat 4157.439 kb on + strandat 4157.478 kb on - strandat 4157.518 kb on + strandat 4157.518 kb on + strandat 4157.539 kb on - strandat 4157.603 kb on - strandat 4157.603 kb on - strandat 4157.637 kb on + strand, within HP15_3928at 4157.687 kb on - strand, within HP15_3928at 4157.854 kb on - strand, within HP15_3928at 4157.856 kb on + strand, within HP15_3928at 4157.863 kb on - strand, within HP15_3928at 4157.868 kb on + strand, within HP15_3928at 4157.874 kb on + strand, within HP15_3928at 4157.882 kb on - strand, within HP15_3928at 4157.887 kb on - strand, within HP15_3928at 4157.889 kb on + strand, within HP15_3928at 4157.952 kb on + strand, within HP15_3928at 4157.975 kb on + strand, within HP15_3928at 4157.983 kb on + strand, within HP15_3928at 4157.991 kb on - strand, within HP15_3928at 4158.046 kb on + strand, within HP15_3928at 4158.046 kb on + strand, within HP15_3928at 4158.069 kb on - strand, within HP15_3928at 4158.186 kb on + strand, within HP15_3928at 4158.431 kb on - strand, within HP15_3928at 4158.488 kb on - strand, within HP15_3928at 4158.493 kb on - strand, within HP15_3928at 4158.540 kb on + strandat 4158.557 kb on + strandat 4158.565 kb on - strandat 4158.597 kb on + strandat 4158.648 kb on + strandat 4158.787 kb on + strand, within HP15_3929at 4158.844 kb on + strand, within HP15_3929at 4158.975 kb on - strand, within HP15_3929at 4159.007 kb on - strand, within HP15_3929at 4159.021 kb on - strand, within HP15_3929at 4159.023 kb on + strand, within HP15_3929at 4159.090 kb on + strand, within HP15_3929at 4159.141 kb on + strand, within HP15_3929at 4159.141 kb on + strand, within HP15_3929at 4159.142 kb on + strand, within HP15_3929at 4159.149 kb on - strand, within HP15_3929at 4159.150 kb on - strand, within HP15_3929at 4159.179 kb on - strand, within HP15_3929at 4159.228 kb on + strand, within HP15_3929at 4159.257 kb on + strand, within HP15_3929at 4159.356 kb on + strand, within HP15_3929at 4159.364 kb on - strand, within HP15_3929at 4159.415 kb on + strand, within HP15_3929at 4159.437 kb on + strand, within HP15_3929at 4159.437 kb on + strand, within HP15_3929at 4159.437 kb on + strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.445 kb on - strand, within HP15_3929at 4159.460 kb on + strand, within HP15_3929at 4159.463 kb on - strand, within HP15_3929at 4159.470 kb on + strand, within HP15_3929at 4159.482 kb on - strand, within HP15_3929at 4159.613 kb on + strand, within HP15_3929

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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4,156,503 + HP15_3926 0.84 +0.4
4,156,600 - HP15_3926 0.89 -0.4
4,156,633 + +0.1
4,156,665 + +0.3
4,156,945 - HP15_3927 0.41 +0.1
4,157,070 + HP15_3927 0.75 +0.2
4,157,078 - HP15_3927 0.77 +0.6
4,157,078 - HP15_3927 0.77 +0.7
4,157,087 + HP15_3927 0.80 -0.1
4,157,087 + HP15_3927 0.80 -0.7
4,157,090 - HP15_3927 0.81 -1.4
4,157,097 + HP15_3927 0.83 -0.4
4,157,353 + -0.1
4,157,413 + -0.8
4,157,439 + -0.7
4,157,478 - +0.8
4,157,518 + -0.4
4,157,518 + +0.4
4,157,539 - +0.6
4,157,603 - -0.6
4,157,603 - -1.7
4,157,637 + HP15_3928 0.12 -1.0
4,157,687 - HP15_3928 0.16 +0.8
4,157,854 - HP15_3928 0.31 -0.4
4,157,856 + HP15_3928 0.31 +0.1
4,157,863 - HP15_3928 0.32 -2.4
4,157,868 + HP15_3928 0.32 -0.6
4,157,874 + HP15_3928 0.33 +1.6
4,157,882 - HP15_3928 0.33 -0.6
4,157,887 - HP15_3928 0.34 +1.0
4,157,889 + HP15_3928 0.34 +0.6
4,157,952 + HP15_3928 0.40 +0.2
4,157,975 + HP15_3928 0.42 -1.4
4,157,983 + HP15_3928 0.42 -0.6
4,157,991 - HP15_3928 0.43 -2.2
4,158,046 + HP15_3928 0.48 -1.1
4,158,046 + HP15_3928 0.48 -0.9
4,158,069 - HP15_3928 0.50 -0.4
4,158,186 + HP15_3928 0.60 +0.1
4,158,431 - HP15_3928 0.82 -0.4
4,158,488 - HP15_3928 0.87 -1.1
4,158,493 - HP15_3928 0.87 -1.2
4,158,540 + -0.5
4,158,557 + -0.8
4,158,565 - +0.1
4,158,597 + -0.4
4,158,648 + +0.6
4,158,787 + HP15_3929 0.12 -1.9
4,158,844 + HP15_3929 0.16 -1.5
4,158,975 - HP15_3929 0.27 -1.7
4,159,007 - HP15_3929 0.30 -0.2
4,159,021 - HP15_3929 0.31 +0.0
4,159,023 + HP15_3929 0.31 +0.4
4,159,090 + HP15_3929 0.37 -1.1
4,159,141 + HP15_3929 0.41 -1.4
4,159,141 + HP15_3929 0.41 -1.9
4,159,142 + HP15_3929 0.41 -0.8
4,159,149 - HP15_3929 0.42 -0.8
4,159,150 - HP15_3929 0.42 +0.2
4,159,179 - HP15_3929 0.44 -0.5
4,159,228 + HP15_3929 0.48 -0.5
4,159,257 + HP15_3929 0.51 -0.7
4,159,356 + HP15_3929 0.59 -3.2
4,159,364 - HP15_3929 0.60 -1.4
4,159,415 + HP15_3929 0.64 -0.4
4,159,437 + HP15_3929 0.66 -1.0
4,159,437 + HP15_3929 0.66 -1.9
4,159,437 + HP15_3929 0.66 -1.7
4,159,445 - HP15_3929 0.66 +0.6
4,159,445 - HP15_3929 0.66 -0.9
4,159,445 - HP15_3929 0.66 -1.8
4,159,445 - HP15_3929 0.66 -0.7
4,159,445 - HP15_3929 0.66 -0.2
4,159,460 + HP15_3929 0.68 +0.9
4,159,463 - HP15_3929 0.68 -0.4
4,159,470 + HP15_3929 0.69 -1.0
4,159,482 - HP15_3929 0.70 -1.2
4,159,613 + HP15_3929 0.81 -1.3

Or see this region's nucleotide sequence