Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3550 and HP15_3551 are separated by 41 nucleotides HP15_3551 and HP15_3552 are separated by 84 nucleotides HP15_3552 and HP15_3553 are separated by 61 nucleotides HP15_3553 and HP15_3554 are separated by 300 nucleotides
HP15_3550: HP15_3550 - conserved hypothetical protein, at 3,739,889 to 3,740,920
_3550
HP15_3551: HP15_3551 - putative hydroxylase, at 3,740,962 to 3,741,636
_3551
HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706
_3552
HP15_3553: HP15_3553 - conserved hypothetical protein, at 3,743,768 to 3,743,968
_3553
HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750
_3554
Position (kb)
3741
3742
3743
3744 Strain fitness (log2 ratio)
-2
-1
0
1 at 3740.723 kb on + strand, within HP15_3550 at 3740.796 kb on + strand, within HP15_3550 at 3740.897 kb on - strand at 3740.898 kb on - strand at 3740.898 kb on - strand at 3740.900 kb on - strand at 3740.948 kb on + strand at 3740.998 kb on - strand at 3741.027 kb on - strand at 3741.056 kb on + strand, within HP15_3551 at 3741.058 kb on + strand, within HP15_3551 at 3741.058 kb on + strand, within HP15_3551 at 3741.066 kb on - strand, within HP15_3551 at 3741.066 kb on - strand, within HP15_3551 at 3741.076 kb on - strand, within HP15_3551 at 3741.102 kb on - strand, within HP15_3551 at 3741.125 kb on - strand, within HP15_3551 at 3741.146 kb on - strand, within HP15_3551 at 3741.171 kb on - strand, within HP15_3551 at 3741.179 kb on - strand, within HP15_3551 at 3741.229 kb on + strand, within HP15_3551 at 3741.229 kb on + strand, within HP15_3551 at 3741.237 kb on - strand, within HP15_3551 at 3741.320 kb on - strand, within HP15_3551 at 3741.408 kb on + strand, within HP15_3551 at 3741.416 kb on - strand, within HP15_3551 at 3741.427 kb on - strand, within HP15_3551 at 3741.432 kb on - strand, within HP15_3551 at 3741.437 kb on - strand, within HP15_3551 at 3741.442 kb on - strand, within HP15_3551 at 3741.534 kb on - strand, within HP15_3551 at 3741.536 kb on - strand, within HP15_3551 at 3741.617 kb on - strand at 3741.673 kb on + strand at 3741.673 kb on + strand at 3741.681 kb on - strand at 3741.886 kb on + strand at 3741.894 kb on - strand at 3741.934 kb on + strand, within HP15_3552 at 3741.991 kb on - strand, within HP15_3552 at 3742.075 kb on - strand, within HP15_3552 at 3742.126 kb on + strand, within HP15_3552 at 3742.146 kb on + strand, within HP15_3552 at 3742.152 kb on + strand, within HP15_3552 at 3742.160 kb on - strand, within HP15_3552 at 3742.160 kb on - strand, within HP15_3552 at 3742.203 kb on + strand, within HP15_3552 at 3742.220 kb on + strand, within HP15_3552 at 3742.228 kb on - strand, within HP15_3552 at 3742.244 kb on - strand, within HP15_3552 at 3742.271 kb on - strand, within HP15_3552 at 3742.271 kb on - strand, within HP15_3552 at 3742.396 kb on + strand, within HP15_3552 at 3742.410 kb on - strand, within HP15_3552 at 3742.485 kb on + strand, within HP15_3552 at 3742.656 kb on + strand, within HP15_3552 at 3742.664 kb on - strand, within HP15_3552 at 3742.719 kb on + strand, within HP15_3552 at 3742.727 kb on - strand, within HP15_3552 at 3742.727 kb on - strand, within HP15_3552 at 3742.727 kb on - strand, within HP15_3552 at 3742.943 kb on - strand, within HP15_3552 at 3743.055 kb on - strand, within HP15_3552 at 3743.146 kb on - strand, within HP15_3552 at 3743.168 kb on - strand, within HP15_3552 at 3743.232 kb on - strand, within HP15_3552 at 3743.282 kb on - strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.383 kb on - strand, within HP15_3552 at 3743.444 kb on + strand, within HP15_3552 at 3743.452 kb on + strand, within HP15_3552 at 3743.534 kb on + strand at 3743.542 kb on - strand at 3743.880 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.905 kb on - strand, within HP15_3553 at 3744.132 kb on + strand at 3744.250 kb on + strand at 3744.274 kb on + strand at 3744.311 kb on - strand at 3744.348 kb on - strand at 3744.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 3,740,723 + HP15_3550 0.81 +1.1 3,740,796 + HP15_3550 0.88 -0.2 3,740,897 - +0.9 3,740,898 - +0.6 3,740,898 - -0.7 3,740,900 - +0.3 3,740,948 + +0.0 3,740,998 - -0.7 3,741,027 - +0.1 3,741,056 + HP15_3551 0.14 -0.8 3,741,058 + HP15_3551 0.14 -1.2 3,741,058 + HP15_3551 0.14 +0.2 3,741,066 - HP15_3551 0.15 +1.0 3,741,066 - HP15_3551 0.15 -0.5 3,741,076 - HP15_3551 0.17 +0.6 3,741,102 - HP15_3551 0.21 +0.3 3,741,125 - HP15_3551 0.24 +0.3 3,741,146 - HP15_3551 0.27 -0.0 3,741,171 - HP15_3551 0.31 +0.0 3,741,179 - HP15_3551 0.32 -1.3 3,741,229 + HP15_3551 0.40 -0.8 3,741,229 + HP15_3551 0.40 -0.2 3,741,237 - HP15_3551 0.41 -0.2 3,741,320 - HP15_3551 0.53 +0.1 3,741,408 + HP15_3551 0.66 +0.3 3,741,416 - HP15_3551 0.67 -0.0 3,741,427 - HP15_3551 0.69 +0.2 3,741,432 - HP15_3551 0.70 -0.3 3,741,437 - HP15_3551 0.70 +0.1 3,741,442 - HP15_3551 0.71 -0.5 3,741,534 - HP15_3551 0.85 -0.4 3,741,536 - HP15_3551 0.85 +0.6 3,741,617 - -0.8 3,741,673 + +0.1 3,741,673 + -0.0 3,741,681 - -0.9 3,741,886 + -0.6 3,741,894 - -0.6 3,741,934 + HP15_3552 0.11 -0.6 3,741,991 - HP15_3552 0.14 -1.4 3,742,075 - HP15_3552 0.18 -1.1 3,742,126 + HP15_3552 0.20 +0.2 3,742,146 + HP15_3552 0.21 -0.8 3,742,152 + HP15_3552 0.22 -1.1 3,742,160 - HP15_3552 0.22 -2.3 3,742,160 - HP15_3552 0.22 -0.6 3,742,203 + HP15_3552 0.24 -0.7 3,742,220 + HP15_3552 0.25 -2.3 3,742,228 - HP15_3552 0.26 -0.9 3,742,244 - HP15_3552 0.26 -0.1 3,742,271 - HP15_3552 0.28 -1.1 3,742,271 - HP15_3552 0.28 -1.0 3,742,396 + HP15_3552 0.34 +0.4 3,742,410 - HP15_3552 0.35 -0.3 3,742,485 + HP15_3552 0.38 -1.6 3,742,656 + HP15_3552 0.47 -0.0 3,742,664 - HP15_3552 0.47 -0.9 3,742,719 + HP15_3552 0.50 -2.3 3,742,727 - HP15_3552 0.51 -1.2 3,742,727 - HP15_3552 0.51 -0.1 3,742,727 - HP15_3552 0.51 -0.6 3,742,943 - HP15_3552 0.62 -1.0 3,743,055 - HP15_3552 0.67 +0.5 3,743,146 - HP15_3552 0.72 +1.7 3,743,168 - HP15_3552 0.73 -0.1 3,743,232 - HP15_3552 0.76 -0.1 3,743,282 - HP15_3552 0.79 -0.4 3,743,344 + HP15_3552 0.82 -0.8 3,743,344 + HP15_3552 0.82 +0.0 3,743,383 - HP15_3552 0.84 -1.3 3,743,444 + HP15_3552 0.87 +0.0 3,743,452 + HP15_3552 0.87 +0.1 3,743,534 + -0.3 3,743,542 - -1.1 3,743,880 + HP15_3553 0.56 +0.9 3,743,897 + HP15_3553 0.64 -0.7 3,743,897 + HP15_3553 0.64 -0.0 3,743,897 + HP15_3553 0.64 -0.1 3,743,897 + HP15_3553 0.64 -0.1 3,743,897 + HP15_3553 0.64 +0.2 3,743,905 - HP15_3553 0.68 +1.7 3,744,132 + -0.6 3,744,250 + -1.3 3,744,274 + +1.0 3,744,311 - +0.0 3,744,348 - -0.8 3,744,373 - +0.8
Or see this region's nucleotide sequence