Strain Fitness in Marinobacter adhaerens HP15 around HP15_3286

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3285 and HP15_3286 are separated by 117 nucleotidesHP15_3286 and HP15_3287 overlap by 4 nucleotidesHP15_3287 and HP15_3288 are separated by 178 nucleotides HP15_3285: HP15_3285 - conserved hypothetical protein, secreted, at 3,443,418 to 3,444,374 _3285 HP15_3286: HP15_3286 - ribulose-phosphate 3-epimerase-like protein, at 3,444,492 to 3,445,178 _3286 HP15_3287: HP15_3287 - phosphoglycolate phosphatase, at 3,445,175 to 3,445,864 _3287 HP15_3288: HP15_3288 - anthranilate synthase component I, at 3,446,043 to 3,447,584 _3288 Position (kb) 3444 3445 3446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3443.521 kb on - strand, within HP15_3285at 3443.598 kb on - strand, within HP15_3285at 3443.664 kb on - strand, within HP15_3285at 3443.674 kb on + strand, within HP15_3285at 3443.677 kb on - strand, within HP15_3285at 3443.679 kb on + strand, within HP15_3285at 3443.679 kb on + strand, within HP15_3285at 3443.679 kb on + strand, within HP15_3285at 3443.682 kb on - strand, within HP15_3285at 3443.687 kb on - strand, within HP15_3285at 3443.687 kb on - strand, within HP15_3285at 3443.687 kb on - strand, within HP15_3285at 3443.736 kb on - strand, within HP15_3285at 3443.824 kb on - strand, within HP15_3285at 3443.870 kb on - strand, within HP15_3285at 3443.888 kb on - strand, within HP15_3285at 3443.898 kb on - strand, within HP15_3285at 3443.913 kb on + strand, within HP15_3285at 3443.929 kb on + strand, within HP15_3285at 3444.009 kb on - strand, within HP15_3285at 3444.057 kb on + strand, within HP15_3285at 3444.134 kb on - strand, within HP15_3285at 3444.144 kb on - strand, within HP15_3285at 3444.144 kb on - strand, within HP15_3285at 3444.154 kb on - strand, within HP15_3285at 3444.211 kb on + strand, within HP15_3285at 3444.211 kb on + strand, within HP15_3285at 3444.219 kb on - strand, within HP15_3285at 3444.219 kb on - strand, within HP15_3285at 3444.221 kb on + strand, within HP15_3285at 3444.289 kb on - strandat 3444.289 kb on - strandat 3444.313 kb on - strandat 3444.318 kb on - strandat 3444.323 kb on - strandat 3445.190 kb on - strandat 3445.206 kb on + strandat 3445.214 kb on - strandat 3445.214 kb on - strandat 3445.241 kb on + strandat 3445.243 kb on + strandat 3445.254 kb on - strand, within HP15_3287at 3445.330 kb on + strand, within HP15_3287at 3445.330 kb on + strand, within HP15_3287at 3445.338 kb on - strand, within HP15_3287at 3445.421 kb on - strand, within HP15_3287at 3445.534 kb on - strand, within HP15_3287at 3445.611 kb on + strand, within HP15_3287at 3445.672 kb on + strand, within HP15_3287at 3445.672 kb on + strand, within HP15_3287at 3445.680 kb on - strand, within HP15_3287at 3445.689 kb on + strand, within HP15_3287at 3445.883 kb on - strandat 3445.920 kb on + strandat 3445.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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3,443,521 - HP15_3285 0.11 -0.0
3,443,598 - HP15_3285 0.19 +0.2
3,443,664 - HP15_3285 0.26 +0.6
3,443,674 + HP15_3285 0.27 -0.4
3,443,677 - HP15_3285 0.27 -0.5
3,443,679 + HP15_3285 0.27 +0.3
3,443,679 + HP15_3285 0.27 -1.4
3,443,679 + HP15_3285 0.27 +0.2
3,443,682 - HP15_3285 0.28 +0.6
3,443,687 - HP15_3285 0.28 +0.1
3,443,687 - HP15_3285 0.28 +0.5
3,443,687 - HP15_3285 0.28 -1.0
3,443,736 - HP15_3285 0.33 +0.8
3,443,824 - HP15_3285 0.42 -0.2
3,443,870 - HP15_3285 0.47 -0.2
3,443,888 - HP15_3285 0.49 -0.2
3,443,898 - HP15_3285 0.50 +0.2
3,443,913 + HP15_3285 0.52 -0.3
3,443,929 + HP15_3285 0.53 +0.6
3,444,009 - HP15_3285 0.62 -1.0
3,444,057 + HP15_3285 0.67 +0.2
3,444,134 - HP15_3285 0.75 +0.7
3,444,144 - HP15_3285 0.76 +0.2
3,444,144 - HP15_3285 0.76 -0.6
3,444,154 - HP15_3285 0.77 +0.8
3,444,211 + HP15_3285 0.83 -0.0
3,444,211 + HP15_3285 0.83 -0.4
3,444,219 - HP15_3285 0.84 +0.1
3,444,219 - HP15_3285 0.84 -0.0
3,444,221 + HP15_3285 0.84 +0.2
3,444,289 - +0.9
3,444,289 - +0.0
3,444,313 - +0.0
3,444,318 - +0.7
3,444,323 - +0.2
3,445,190 - +0.6
3,445,206 + -0.6
3,445,214 - -0.0
3,445,214 - +0.4
3,445,241 + -0.1
3,445,243 + +0.3
3,445,254 - HP15_3287 0.11 +0.1
3,445,330 + HP15_3287 0.22 +2.2
3,445,330 + HP15_3287 0.22 +1.5
3,445,338 - HP15_3287 0.24 +0.6
3,445,421 - HP15_3287 0.36 +0.5
3,445,534 - HP15_3287 0.52 +1.2
3,445,611 + HP15_3287 0.63 +0.8
3,445,672 + HP15_3287 0.72 -0.2
3,445,672 + HP15_3287 0.72 +0.7
3,445,680 - HP15_3287 0.73 +0.6
3,445,689 + HP15_3287 0.74 +0.2
3,445,883 - -3.0
3,445,920 + +0.6
3,445,964 + -0.0

Or see this region's nucleotide sequence