Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3081 and HP15_3082 are separated by 92 nucleotides HP15_3082 and HP15_3083 are separated by 44 nucleotides HP15_3083 and HP15_3084 are separated by 79 nucleotides
HP15_3081: HP15_3081 - chaperone protein DnaK, at 3,236,946 to 3,238,871
_3081
HP15_3082: HP15_3082 - GrpE nucleotide exchange factor, at 3,238,964 to 3,239,563
_3082
HP15_3083: HP15_3083 - hypothetical protein, at 3,239,608 to 3,239,739
_3083
HP15_3084: HP15_3084 - DNA repair protein RecN, at 3,239,819 to 3,241,498
_3084
Position (kb)
3239
3240 Strain fitness (log2 ratio)
-2
-1
0
1 at 3239.019 kb on - strand at 3239.604 kb on - strand at 3239.663 kb on - strand, within HP15_3083 at 3239.677 kb on + strand, within HP15_3083 at 3239.680 kb on - strand, within HP15_3083 at 3239.885 kb on + strand at 3239.940 kb on + strand at 3239.999 kb on - strand, within HP15_3084 at 3240.093 kb on - strand, within HP15_3084 at 3240.151 kb on - strand, within HP15_3084 at 3240.151 kb on - strand, within HP15_3084 at 3240.181 kb on - strand, within HP15_3084 at 3240.187 kb on + strand, within HP15_3084 at 3240.365 kb on + strand, within HP15_3084 at 3240.514 kb on + strand, within HP15_3084 at 3240.517 kb on - strand, within HP15_3084 at 3240.522 kb on - strand, within HP15_3084 at 3240.522 kb on - strand, within HP15_3084 at 3240.527 kb on + strand, within HP15_3084 at 3240.535 kb on - strand, within HP15_3084 at 3240.535 kb on - strand, within HP15_3084 at 3240.604 kb on + strand, within HP15_3084 at 3240.612 kb on - strand, within HP15_3084 at 3240.646 kb on - strand, within HP15_3084 at 3240.657 kb on + strand, within HP15_3084 at 3240.693 kb on - strand, within HP15_3084 at 3240.703 kb on - strand, within HP15_3084 at 3240.735 kb on - strand, within HP15_3084
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 3,239,019 - -0.1 3,239,604 - -0.0 3,239,663 - HP15_3083 0.42 -1.2 3,239,677 + HP15_3083 0.52 -1.6 3,239,680 - HP15_3083 0.55 +0.2 3,239,885 + +0.0 3,239,940 + -1.8 3,239,999 - HP15_3084 0.11 +1.2 3,240,093 - HP15_3084 0.16 -2.3 3,240,151 - HP15_3084 0.20 -0.5 3,240,151 - HP15_3084 0.20 +1.0 3,240,181 - HP15_3084 0.22 +0.1 3,240,187 + HP15_3084 0.22 +0.1 3,240,365 + HP15_3084 0.33 -0.6 3,240,514 + HP15_3084 0.41 +0.0 3,240,517 - HP15_3084 0.42 +0.6 3,240,522 - HP15_3084 0.42 -0.1 3,240,522 - HP15_3084 0.42 -0.3 3,240,527 + HP15_3084 0.42 -0.2 3,240,535 - HP15_3084 0.43 -1.4 3,240,535 - HP15_3084 0.43 +1.2 3,240,604 + HP15_3084 0.47 -0.4 3,240,612 - HP15_3084 0.47 +0.2 3,240,646 - HP15_3084 0.49 +0.1 3,240,657 + HP15_3084 0.50 +0.1 3,240,693 - HP15_3084 0.52 -1.1 3,240,703 - HP15_3084 0.53 +0.2 3,240,735 - HP15_3084 0.55 +0.1
Or see this region's nucleotide sequence