Strain Fitness in Marinobacter adhaerens HP15 around HP15_2886

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2884 and HP15_2885 are separated by 455 nucleotidesHP15_2885 and HP15_2886 are separated by 151 nucleotidesHP15_2886 and HP15_2887 overlap by 4 nucleotides HP15_2884: HP15_2884 - transcriptional regulator, GntR family, at 3,020,920 to 3,021,612 _2884 HP15_2885: HP15_2885 - secreted protein containing competence protein ComEA, helix-hairpin-helix region domain, at 3,022,068 to 3,022,337 _2885 HP15_2886: HP15_2886 - protein of unknown function cysteine-rich region domain protein, at 3,022,489 to 3,023,268 _2886 HP15_2887: HP15_2887 - iron-sulfur cluster binding protein, at 3,023,265 to 3,024,704 _2887 Position (kb) 3022 3023 3024Strain fitness (log2 ratio) -2 -1 0 1 2at 3021.540 kb on + strand, within HP15_2884at 3021.548 kb on - strandat 3021.555 kb on + strandat 3021.710 kb on - strandat 3021.815 kb on - strandat 3021.832 kb on - strandat 3021.862 kb on + strandat 3021.869 kb on + strandat 3021.892 kb on - strandat 3021.897 kb on + strandat 3022.016 kb on + strandat 3022.051 kb on - strandat 3022.093 kb on + strandat 3022.101 kb on - strand, within HP15_2885at 3022.195 kb on + strand, within HP15_2885at 3022.203 kb on - strand, within HP15_2885at 3022.205 kb on + strand, within HP15_2885at 3022.208 kb on - strand, within HP15_2885at 3022.208 kb on - strand, within HP15_2885at 3022.208 kb on - strand, within HP15_2885at 3022.213 kb on - strand, within HP15_2885at 3022.334 kb on + strandat 3022.340 kb on - strandat 3022.342 kb on - strandat 3022.342 kb on - strandat 3022.360 kb on + strandat 3022.389 kb on + strandat 3022.389 kb on + strandat 3022.514 kb on - strandat 3022.563 kb on + strandat 3022.563 kb on + strandat 3022.563 kb on + strandat 3022.571 kb on - strand, within HP15_2886at 3022.605 kb on - strand, within HP15_2886at 3022.613 kb on + strand, within HP15_2886at 3022.636 kb on + strand, within HP15_2886at 3022.675 kb on - strand, within HP15_2886at 3022.707 kb on - strand, within HP15_2886at 3022.787 kb on - strand, within HP15_2886at 3022.787 kb on - strand, within HP15_2886at 3022.787 kb on - strand, within HP15_2886at 3022.792 kb on - strand, within HP15_2886at 3022.792 kb on - strand, within HP15_2886at 3022.795 kb on + strand, within HP15_2886at 3022.815 kb on + strand, within HP15_2886at 3022.823 kb on - strand, within HP15_2886at 3022.894 kb on + strand, within HP15_2886at 3022.913 kb on - strand, within HP15_2886at 3022.937 kb on - strand, within HP15_2886at 3023.034 kb on - strand, within HP15_2886at 3023.059 kb on - strand, within HP15_2886at 3023.108 kb on - strand, within HP15_2886at 3023.112 kb on + strand, within HP15_2886at 3023.198 kb on - strandat 3023.200 kb on + strandat 3023.244 kb on + strandat 3023.244 kb on + strandat 3023.284 kb on + strandat 3023.542 kb on - strand, within HP15_2887at 3023.621 kb on + strand, within HP15_2887at 3023.686 kb on + strand, within HP15_2887at 3023.714 kb on - strand, within HP15_2887at 3023.743 kb on - strand, within HP15_2887at 3023.895 kb on + strand, within HP15_2887at 3023.926 kb on - strand, within HP15_2887at 3023.930 kb on + strand, within HP15_2887at 3024.042 kb on - strand, within HP15_2887at 3024.042 kb on - strand, within HP15_2887at 3024.042 kb on - strand, within HP15_2887at 3024.047 kb on - strand, within HP15_2887at 3024.072 kb on + strand, within HP15_2887at 3024.080 kb on - strand, within HP15_2887at 3024.113 kb on + strand, within HP15_2887at 3024.118 kb on + strand, within HP15_2887at 3024.126 kb on - strand, within HP15_2887at 3024.247 kb on + strand, within HP15_2887

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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3,021,540 + HP15_2884 0.89 -0.5
3,021,548 - +0.5
3,021,555 + -0.3
3,021,710 - -0.5
3,021,815 - +0.1
3,021,832 - -0.8
3,021,862 + -2.1
3,021,869 + +0.1
3,021,892 - -0.5
3,021,897 + +0.2
3,022,016 + +1.4
3,022,051 - +0.3
3,022,093 + +0.1
3,022,101 - HP15_2885 0.12 +0.3
3,022,195 + HP15_2885 0.47 +2.3
3,022,203 - HP15_2885 0.50 -0.5
3,022,205 + HP15_2885 0.51 +0.1
3,022,208 - HP15_2885 0.52 +1.8
3,022,208 - HP15_2885 0.52 -0.1
3,022,208 - HP15_2885 0.52 -0.2
3,022,213 - HP15_2885 0.54 -0.2
3,022,334 + +1.1
3,022,340 - +0.4
3,022,342 - -0.1
3,022,342 - -0.2
3,022,360 + -0.5
3,022,389 + +1.5
3,022,389 + -0.1
3,022,514 - +0.7
3,022,563 + -0.3
3,022,563 + +0.9
3,022,563 + -0.2
3,022,571 - HP15_2886 0.11 -0.5
3,022,605 - HP15_2886 0.15 -0.1
3,022,613 + HP15_2886 0.16 -0.4
3,022,636 + HP15_2886 0.19 -0.7
3,022,675 - HP15_2886 0.24 -0.2
3,022,707 - HP15_2886 0.28 -0.1
3,022,787 - HP15_2886 0.38 -0.4
3,022,787 - HP15_2886 0.38 -0.3
3,022,787 - HP15_2886 0.38 +0.5
3,022,792 - HP15_2886 0.39 -0.3
3,022,792 - HP15_2886 0.39 +0.7
3,022,795 + HP15_2886 0.39 -0.5
3,022,815 + HP15_2886 0.42 -0.5
3,022,823 - HP15_2886 0.43 -0.1
3,022,894 + HP15_2886 0.52 +0.2
3,022,913 - HP15_2886 0.54 +0.3
3,022,937 - HP15_2886 0.57 +0.7
3,023,034 - HP15_2886 0.70 -0.9
3,023,059 - HP15_2886 0.73 +0.5
3,023,108 - HP15_2886 0.79 +0.2
3,023,112 + HP15_2886 0.80 +0.7
3,023,198 - +0.7
3,023,200 + -0.3
3,023,244 + -0.9
3,023,244 + -0.9
3,023,284 + +2.7
3,023,542 - HP15_2887 0.19 +0.2
3,023,621 + HP15_2887 0.25 +0.4
3,023,686 + HP15_2887 0.29 -0.0
3,023,714 - HP15_2887 0.31 +0.1
3,023,743 - HP15_2887 0.33 -0.2
3,023,895 + HP15_2887 0.44 -0.2
3,023,926 - HP15_2887 0.46 +0.0
3,023,930 + HP15_2887 0.46 -0.1
3,024,042 - HP15_2887 0.54 -1.8
3,024,042 - HP15_2887 0.54 +0.4
3,024,042 - HP15_2887 0.54 -0.5
3,024,047 - HP15_2887 0.54 -1.2
3,024,072 + HP15_2887 0.56 -1.0
3,024,080 - HP15_2887 0.57 +0.4
3,024,113 + HP15_2887 0.59 -0.0
3,024,118 + HP15_2887 0.59 -0.3
3,024,126 - HP15_2887 0.60 -1.0
3,024,247 + HP15_2887 0.68 +0.2

Or see this region's nucleotide sequence