Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2884 and HP15_2885 are separated by 455 nucleotides HP15_2885 and HP15_2886 are separated by 151 nucleotides HP15_2886 and HP15_2887 overlap by 4 nucleotides
HP15_2884: HP15_2884 - transcriptional regulator, GntR family, at 3,020,920 to 3,021,612
_2884
HP15_2885: HP15_2885 - secreted protein containing competence protein ComEA, helix-hairpin-helix region domain, at 3,022,068 to 3,022,337
_2885
HP15_2886: HP15_2886 - protein of unknown function cysteine-rich region domain protein, at 3,022,489 to 3,023,268
_2886
HP15_2887: HP15_2887 - iron-sulfur cluster binding protein, at 3,023,265 to 3,024,704
_2887
Position (kb)
3022
3023
3024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3021.540 kb on + strand, within HP15_2884 at 3021.548 kb on - strand at 3021.555 kb on + strand at 3021.710 kb on - strand at 3021.815 kb on - strand at 3021.832 kb on - strand at 3021.862 kb on + strand at 3021.869 kb on + strand at 3021.892 kb on - strand at 3021.897 kb on + strand at 3022.016 kb on + strand at 3022.051 kb on - strand at 3022.093 kb on + strand at 3022.101 kb on - strand, within HP15_2885 at 3022.195 kb on + strand, within HP15_2885 at 3022.203 kb on - strand, within HP15_2885 at 3022.205 kb on + strand, within HP15_2885 at 3022.208 kb on - strand, within HP15_2885 at 3022.208 kb on - strand, within HP15_2885 at 3022.208 kb on - strand, within HP15_2885 at 3022.213 kb on - strand, within HP15_2885 at 3022.334 kb on + strand at 3022.340 kb on - strand at 3022.342 kb on - strand at 3022.342 kb on - strand at 3022.360 kb on + strand at 3022.389 kb on + strand at 3022.389 kb on + strand at 3022.514 kb on - strand at 3022.563 kb on + strand at 3022.563 kb on + strand at 3022.563 kb on + strand at 3022.571 kb on - strand, within HP15_2886 at 3022.605 kb on - strand, within HP15_2886 at 3022.613 kb on + strand, within HP15_2886 at 3022.636 kb on + strand, within HP15_2886 at 3022.675 kb on - strand, within HP15_2886 at 3022.707 kb on - strand, within HP15_2886 at 3022.787 kb on - strand, within HP15_2886 at 3022.787 kb on - strand, within HP15_2886 at 3022.787 kb on - strand, within HP15_2886 at 3022.792 kb on - strand, within HP15_2886 at 3022.792 kb on - strand, within HP15_2886 at 3022.795 kb on + strand, within HP15_2886 at 3022.815 kb on + strand, within HP15_2886 at 3022.823 kb on - strand, within HP15_2886 at 3022.894 kb on + strand, within HP15_2886 at 3022.913 kb on - strand, within HP15_2886 at 3022.937 kb on - strand, within HP15_2886 at 3023.034 kb on - strand, within HP15_2886 at 3023.059 kb on - strand, within HP15_2886 at 3023.108 kb on - strand, within HP15_2886 at 3023.112 kb on + strand, within HP15_2886 at 3023.198 kb on - strand at 3023.200 kb on + strand at 3023.244 kb on + strand at 3023.244 kb on + strand at 3023.284 kb on + strand at 3023.542 kb on - strand, within HP15_2887 at 3023.621 kb on + strand, within HP15_2887 at 3023.686 kb on + strand, within HP15_2887 at 3023.714 kb on - strand, within HP15_2887 at 3023.743 kb on - strand, within HP15_2887 at 3023.895 kb on + strand, within HP15_2887 at 3023.926 kb on - strand, within HP15_2887 at 3023.930 kb on + strand, within HP15_2887 at 3024.042 kb on - strand, within HP15_2887 at 3024.042 kb on - strand, within HP15_2887 at 3024.042 kb on - strand, within HP15_2887 at 3024.047 kb on - strand, within HP15_2887 at 3024.072 kb on + strand, within HP15_2887 at 3024.080 kb on - strand, within HP15_2887 at 3024.113 kb on + strand, within HP15_2887 at 3024.118 kb on + strand, within HP15_2887 at 3024.126 kb on - strand, within HP15_2887 at 3024.247 kb on + strand, within HP15_2887
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 3,021,540 + HP15_2884 0.89 -0.5 3,021,548 - +0.5 3,021,555 + -0.3 3,021,710 - -0.5 3,021,815 - +0.1 3,021,832 - -0.8 3,021,862 + -2.1 3,021,869 + +0.1 3,021,892 - -0.5 3,021,897 + +0.2 3,022,016 + +1.4 3,022,051 - +0.3 3,022,093 + +0.1 3,022,101 - HP15_2885 0.12 +0.3 3,022,195 + HP15_2885 0.47 +2.3 3,022,203 - HP15_2885 0.50 -0.5 3,022,205 + HP15_2885 0.51 +0.1 3,022,208 - HP15_2885 0.52 +1.8 3,022,208 - HP15_2885 0.52 -0.1 3,022,208 - HP15_2885 0.52 -0.2 3,022,213 - HP15_2885 0.54 -0.2 3,022,334 + +1.1 3,022,340 - +0.4 3,022,342 - -0.1 3,022,342 - -0.2 3,022,360 + -0.5 3,022,389 + +1.5 3,022,389 + -0.1 3,022,514 - +0.7 3,022,563 + -0.3 3,022,563 + +0.9 3,022,563 + -0.2 3,022,571 - HP15_2886 0.11 -0.5 3,022,605 - HP15_2886 0.15 -0.1 3,022,613 + HP15_2886 0.16 -0.4 3,022,636 + HP15_2886 0.19 -0.7 3,022,675 - HP15_2886 0.24 -0.2 3,022,707 - HP15_2886 0.28 -0.1 3,022,787 - HP15_2886 0.38 -0.4 3,022,787 - HP15_2886 0.38 -0.3 3,022,787 - HP15_2886 0.38 +0.5 3,022,792 - HP15_2886 0.39 -0.3 3,022,792 - HP15_2886 0.39 +0.7 3,022,795 + HP15_2886 0.39 -0.5 3,022,815 + HP15_2886 0.42 -0.5 3,022,823 - HP15_2886 0.43 -0.1 3,022,894 + HP15_2886 0.52 +0.2 3,022,913 - HP15_2886 0.54 +0.3 3,022,937 - HP15_2886 0.57 +0.7 3,023,034 - HP15_2886 0.70 -0.9 3,023,059 - HP15_2886 0.73 +0.5 3,023,108 - HP15_2886 0.79 +0.2 3,023,112 + HP15_2886 0.80 +0.7 3,023,198 - +0.7 3,023,200 + -0.3 3,023,244 + -0.9 3,023,244 + -0.9 3,023,284 + +2.7 3,023,542 - HP15_2887 0.19 +0.2 3,023,621 + HP15_2887 0.25 +0.4 3,023,686 + HP15_2887 0.29 -0.0 3,023,714 - HP15_2887 0.31 +0.1 3,023,743 - HP15_2887 0.33 -0.2 3,023,895 + HP15_2887 0.44 -0.2 3,023,926 - HP15_2887 0.46 +0.0 3,023,930 + HP15_2887 0.46 -0.1 3,024,042 - HP15_2887 0.54 -1.8 3,024,042 - HP15_2887 0.54 +0.4 3,024,042 - HP15_2887 0.54 -0.5 3,024,047 - HP15_2887 0.54 -1.2 3,024,072 + HP15_2887 0.56 -1.0 3,024,080 - HP15_2887 0.57 +0.4 3,024,113 + HP15_2887 0.59 -0.0 3,024,118 + HP15_2887 0.59 -0.3 3,024,126 - HP15_2887 0.60 -1.0 3,024,247 + HP15_2887 0.68 +0.2
Or see this region's nucleotide sequence