Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2537 and HP15_2538 are separated by 10 nucleotides HP15_2538 and HP15_2540 are separated by 143 nucleotides HP15_2540 and HP15_2539 overlap by 21 nucleotides
HP15_2537: HP15_2537 - oxidoreductase, short-chain dehydrogenase/reductase family, at 2,681,919 to 2,682,785
_2537
HP15_2538: HP15_2538 - acetyl/propionyl-CoA carboxylase beta subunit, at 2,682,796 to 2,684,412
_2538
HP15_2540: HP15_2540 - hypothetical protein, at 2,684,556 to 2,684,810
_2540
HP15_2539: HP15_2539 - acyl-CoA dehydrogenase domain protein, at 2,684,790 to 2,685,950
_2539
Position (kb)
2682
2683
2684
2685 Strain fitness (log2 ratio)
-1
0
1 at 2681.797 kb on - strand at 2681.797 kb on - strand at 2681.854 kb on - strand at 2681.907 kb on - strand at 2681.959 kb on - strand at 2682.045 kb on - strand, within HP15_2537 at 2682.134 kb on - strand, within HP15_2537 at 2682.138 kb on + strand, within HP15_2537 at 2682.168 kb on - strand, within HP15_2537 at 2682.189 kb on + strand, within HP15_2537 at 2682.258 kb on + strand, within HP15_2537 at 2682.258 kb on + strand, within HP15_2537 at 2682.282 kb on + strand, within HP15_2537 at 2682.306 kb on + strand, within HP15_2537 at 2682.399 kb on - strand, within HP15_2537 at 2682.423 kb on - strand, within HP15_2537 at 2682.453 kb on + strand, within HP15_2537 at 2682.631 kb on + strand, within HP15_2537 at 2682.642 kb on + strand, within HP15_2537 at 2682.699 kb on - strand at 2682.699 kb on - strand at 2682.706 kb on - strand at 2682.717 kb on + strand at 2682.732 kb on + strand at 2682.750 kb on - strand at 2682.909 kb on - strand at 2682.945 kb on + strand at 2682.954 kb on + strand at 2682.976 kb on - strand, within HP15_2538 at 2683.025 kb on + strand, within HP15_2538 at 2683.117 kb on - strand, within HP15_2538 at 2683.167 kb on + strand, within HP15_2538 at 2683.425 kb on - strand, within HP15_2538 at 2683.425 kb on - strand, within HP15_2538 at 2683.436 kb on + strand, within HP15_2538 at 2683.444 kb on - strand, within HP15_2538 at 2683.501 kb on - strand, within HP15_2538 at 2683.593 kb on - strand, within HP15_2538 at 2683.700 kb on - strand, within HP15_2538 at 2683.773 kb on + strand, within HP15_2538 at 2683.862 kb on - strand, within HP15_2538 at 2683.928 kb on + strand, within HP15_2538 at 2683.959 kb on - strand, within HP15_2538 at 2684.221 kb on - strand, within HP15_2538 at 2684.222 kb on + strand, within HP15_2538 at 2684.227 kb on + strand, within HP15_2538 at 2684.271 kb on + strand at 2684.279 kb on - strand at 2684.537 kb on + strand at 2684.810 kb on - strand at 2684.978 kb on + strand, within HP15_2539 at 2684.986 kb on - strand, within HP15_2539 at 2685.067 kb on + strand, within HP15_2539 at 2685.244 kb on + strand, within HP15_2539 at 2685.389 kb on - strand, within HP15_2539
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 2,681,797 - +0.7 2,681,797 - +0.1 2,681,854 - +1.2 2,681,907 - +0.0 2,681,959 - -0.6 2,682,045 - HP15_2537 0.15 +0.5 2,682,134 - HP15_2537 0.25 -0.9 2,682,138 + HP15_2537 0.25 +1.1 2,682,168 - HP15_2537 0.29 +0.5 2,682,189 + HP15_2537 0.31 -0.5 2,682,258 + HP15_2537 0.39 +0.2 2,682,258 + HP15_2537 0.39 +0.3 2,682,282 + HP15_2537 0.42 +0.1 2,682,306 + HP15_2537 0.45 +0.1 2,682,399 - HP15_2537 0.55 +0.3 2,682,423 - HP15_2537 0.58 -0.7 2,682,453 + HP15_2537 0.62 -0.0 2,682,631 + HP15_2537 0.82 -0.3 2,682,642 + HP15_2537 0.83 +0.6 2,682,699 - -0.2 2,682,699 - +0.1 2,682,706 - +0.4 2,682,717 + +0.9 2,682,732 + -1.2 2,682,750 - -0.2 2,682,909 - +0.6 2,682,945 + +0.4 2,682,954 + -1.6 2,682,976 - HP15_2538 0.11 +0.2 2,683,025 + HP15_2538 0.14 +0.2 2,683,117 - HP15_2538 0.20 -0.9 2,683,167 + HP15_2538 0.23 +0.2 2,683,425 - HP15_2538 0.39 +0.0 2,683,425 - HP15_2538 0.39 -0.8 2,683,436 + HP15_2538 0.40 -0.1 2,683,444 - HP15_2538 0.40 -0.3 2,683,501 - HP15_2538 0.44 -0.1 2,683,593 - HP15_2538 0.49 -0.4 2,683,700 - HP15_2538 0.56 +0.0 2,683,773 + HP15_2538 0.60 -0.5 2,683,862 - HP15_2538 0.66 -0.7 2,683,928 + HP15_2538 0.70 +0.7 2,683,959 - HP15_2538 0.72 -0.5 2,684,221 - HP15_2538 0.88 +0.1 2,684,222 + HP15_2538 0.88 -1.3 2,684,227 + HP15_2538 0.88 -0.6 2,684,271 + -0.2 2,684,279 - +0.4 2,684,537 + -0.0 2,684,810 - -0.4 2,684,978 + HP15_2539 0.16 -0.0 2,684,986 - HP15_2539 0.17 +0.4 2,685,067 + HP15_2539 0.24 -0.1 2,685,244 + HP15_2539 0.39 -0.4 2,685,389 - HP15_2539 0.52 -0.4
Or see this region's nucleotide sequence