Strain Fitness in Marinobacter adhaerens HP15 around HP15_2229

Experiment: Glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2226 and HP15_2227 are separated by 4 nucleotidesHP15_2227 and HP15_2228 are separated by 51 nucleotidesHP15_2228 and HP15_2229 are separated by 30 nucleotidesHP15_2229 and HP15_2230 are separated by 179 nucleotides HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577 _2226 HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872 _2227 HP15_2228: HP15_2228 - ribonuclease activity regulator protein RraA, at 2,344,924 to 2,345,403 _2228 HP15_2229: HP15_2229 - phosphoenolpyruvate synthase, at 2,345,434 to 2,347,806 _2229 HP15_2230: HP15_2230 - phosphotransferase YdiA, at 2,347,986 to 2,348,801 _2230 Position (kb) 2345 2346 2347 2348Strain fitness (log2 ratio) -1 0 1at 2344.616 kb on + strand, within HP15_2227at 2344.646 kb on + strand, within HP15_2227at 2344.679 kb on + strand, within HP15_2227at 2344.712 kb on + strand, within HP15_2227at 2344.769 kb on - strand, within HP15_2227at 2345.019 kb on + strand, within HP15_2228at 2345.042 kb on - strand, within HP15_2228at 2345.897 kb on - strand, within HP15_2229at 2346.128 kb on - strand, within HP15_2229at 2346.131 kb on + strand, within HP15_2229at 2346.247 kb on - strand, within HP15_2229at 2346.974 kb on - strand, within HP15_2229at 2347.119 kb on - strand, within HP15_2229at 2347.137 kb on + strand, within HP15_2229at 2347.145 kb on - strand, within HP15_2229at 2347.305 kb on - strand, within HP15_2229at 2347.825 kb on - strandat 2347.875 kb on + strandat 2347.964 kb on + strandat 2347.972 kb on - strandat 2348.031 kb on + strandat 2348.085 kb on - strand, within HP15_2230at 2348.102 kb on - strand, within HP15_2230at 2348.167 kb on + strand, within HP15_2230at 2348.280 kb on - strand, within HP15_2230at 2348.344 kb on + strand, within HP15_2230at 2348.352 kb on - strand, within HP15_2230at 2348.538 kb on + strand, within HP15_2230at 2348.666 kb on + strand, within HP15_2230at 2348.726 kb on + strandat 2348.756 kb on - strandat 2348.796 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
remove
2,344,616 + HP15_2227 0.12 +0.6
2,344,646 + HP15_2227 0.22 -0.1
2,344,679 + HP15_2227 0.33 +0.6
2,344,712 + HP15_2227 0.45 -0.2
2,344,769 - HP15_2227 0.64 +1.7
2,345,019 + HP15_2228 0.20 +0.1
2,345,042 - HP15_2228 0.25 -0.3
2,345,897 - HP15_2229 0.20 -0.5
2,346,128 - HP15_2229 0.29 +0.0
2,346,131 + HP15_2229 0.29 +0.6
2,346,247 - HP15_2229 0.34 -1.4
2,346,974 - HP15_2229 0.65 +0.6
2,347,119 - HP15_2229 0.71 +1.1
2,347,137 + HP15_2229 0.72 +1.4
2,347,145 - HP15_2229 0.72 +1.7
2,347,305 - HP15_2229 0.79 -0.6
2,347,825 - -0.6
2,347,875 + +0.2
2,347,964 + -1.2
2,347,972 - -0.4
2,348,031 + -0.2
2,348,085 - HP15_2230 0.12 -0.4
2,348,102 - HP15_2230 0.14 +1.1
2,348,167 + HP15_2230 0.22 +1.1
2,348,280 - HP15_2230 0.36 +0.6
2,348,344 + HP15_2230 0.44 +0.1
2,348,352 - HP15_2230 0.45 +0.9
2,348,538 + HP15_2230 0.68 +1.1
2,348,666 + HP15_2230 0.83 +1.0
2,348,726 + +0.3
2,348,756 - +0.5
2,348,796 + +0.2

Or see this region's nucleotide sequence