Strain Fitness in Marinobacter adhaerens HP15 around HP15_2174

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2172 and HP15_2173 are separated by 21 nucleotidesHP15_2173 and HP15_2174 overlap by 4 nucleotidesHP15_2174 and HP15_2175 are separated by 157 nucleotides HP15_2172: HP15_2172 - nitrorecductase, at 2,282,323 to 2,283,063 _2172 HP15_2173: HP15_2173 - glucokinase, at 2,283,085 to 2,284,050 _2173 HP15_2174: HP15_2174 - 6-phosphogluconate dehydratase, at 2,284,047 to 2,285,879 _2174 HP15_2175: HP15_2175 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,286,037 to 2,287,041 _2175 Position (kb) 2284 2285 2286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2283.057 kb on + strandat 2283.108 kb on - strandat 2283.249 kb on + strand, within HP15_2173at 2283.297 kb on - strand, within HP15_2173at 2283.367 kb on + strand, within HP15_2173at 2283.422 kb on + strand, within HP15_2173at 2283.422 kb on + strand, within HP15_2173at 2283.460 kb on + strand, within HP15_2173at 2283.468 kb on - strand, within HP15_2173at 2283.575 kb on + strand, within HP15_2173at 2283.593 kb on - strand, within HP15_2173at 2283.649 kb on - strand, within HP15_2173at 2283.742 kb on + strand, within HP15_2173at 2283.922 kb on - strand, within HP15_2173at 2284.014 kb on - strandat 2284.036 kb on + strandat 2284.256 kb on - strand, within HP15_2174at 2284.402 kb on - strand, within HP15_2174at 2284.402 kb on - strand, within HP15_2174at 2284.402 kb on - strand, within HP15_2174at 2284.407 kb on - strand, within HP15_2174at 2284.409 kb on + strand, within HP15_2174at 2284.420 kb on + strand, within HP15_2174at 2284.655 kb on - strand, within HP15_2174at 2284.723 kb on + strand, within HP15_2174at 2284.730 kb on + strand, within HP15_2174at 2284.736 kb on - strand, within HP15_2174at 2284.935 kb on + strand, within HP15_2174at 2285.034 kb on - strand, within HP15_2174at 2285.039 kb on - strand, within HP15_2174at 2285.056 kb on + strand, within HP15_2174at 2285.109 kb on + strand, within HP15_2174at 2285.275 kb on + strand, within HP15_2174at 2285.324 kb on + strand, within HP15_2174at 2285.436 kb on - strand, within HP15_2174at 2285.522 kb on - strand, within HP15_2174at 2285.643 kb on + strand, within HP15_2174at 2285.740 kb on + strandat 2285.753 kb on - strandat 2285.762 kb on - strandat 2286.122 kb on + strandat 2286.147 kb on + strand, within HP15_2175at 2286.183 kb on + strand, within HP15_2175at 2286.330 kb on - strand, within HP15_2175at 2286.362 kb on - strand, within HP15_2175at 2286.372 kb on + strand, within HP15_2175at 2286.402 kb on - strand, within HP15_2175at 2286.402 kb on - strand, within HP15_2175at 2286.409 kb on - strand, within HP15_2175at 2286.421 kb on - strand, within HP15_2175at 2286.529 kb on + strand, within HP15_2175at 2286.529 kb on + strand, within HP15_2175at 2286.574 kb on + strand, within HP15_2175at 2286.610 kb on + strand, within HP15_2175at 2286.612 kb on + strand, within HP15_2175at 2286.625 kb on - strand, within HP15_2175

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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2,283,057 + +0.1
2,283,108 - +0.1
2,283,249 + HP15_2173 0.17 +0.2
2,283,297 - HP15_2173 0.22 +0.1
2,283,367 + HP15_2173 0.29 -0.1
2,283,422 + HP15_2173 0.35 +0.1
2,283,422 + HP15_2173 0.35 +1.2
2,283,460 + HP15_2173 0.39 -0.1
2,283,468 - HP15_2173 0.40 -1.0
2,283,575 + HP15_2173 0.51 +0.5
2,283,593 - HP15_2173 0.53 -0.7
2,283,649 - HP15_2173 0.58 +0.1
2,283,742 + HP15_2173 0.68 +0.8
2,283,922 - HP15_2173 0.87 +0.1
2,284,014 - +0.1
2,284,036 + +0.1
2,284,256 - HP15_2174 0.11 -2.7
2,284,402 - HP15_2174 0.19 -3.0
2,284,402 - HP15_2174 0.19 -2.5
2,284,402 - HP15_2174 0.19 -3.7
2,284,407 - HP15_2174 0.20 -3.5
2,284,409 + HP15_2174 0.20 -2.9
2,284,420 + HP15_2174 0.20 -3.4
2,284,655 - HP15_2174 0.33 -3.8
2,284,723 + HP15_2174 0.37 -2.9
2,284,730 + HP15_2174 0.37 -2.7
2,284,736 - HP15_2174 0.38 -3.0
2,284,935 + HP15_2174 0.48 -2.9
2,285,034 - HP15_2174 0.54 -2.8
2,285,039 - HP15_2174 0.54 -3.1
2,285,056 + HP15_2174 0.55 -3.0
2,285,109 + HP15_2174 0.58 -2.7
2,285,275 + HP15_2174 0.67 -2.7
2,285,324 + HP15_2174 0.70 -1.8
2,285,436 - HP15_2174 0.76 -3.8
2,285,522 - HP15_2174 0.80 -1.2
2,285,643 + HP15_2174 0.87 -2.4
2,285,740 + -2.2
2,285,753 - -3.1
2,285,762 - -3.3
2,286,122 + -1.0
2,286,147 + HP15_2175 0.11 -2.0
2,286,183 + HP15_2175 0.15 -2.5
2,286,330 - HP15_2175 0.29 -1.8
2,286,362 - HP15_2175 0.32 -1.4
2,286,372 + HP15_2175 0.33 -2.2
2,286,402 - HP15_2175 0.36 -1.2
2,286,402 - HP15_2175 0.36 -1.3
2,286,409 - HP15_2175 0.37 +0.7
2,286,421 - HP15_2175 0.38 -0.3
2,286,529 + HP15_2175 0.49 -1.5
2,286,529 + HP15_2175 0.49 -1.5
2,286,574 + HP15_2175 0.53 +0.1
2,286,610 + HP15_2175 0.57 -1.0
2,286,612 + HP15_2175 0.57 +0.3
2,286,625 - HP15_2175 0.59 -1.3

Or see this region's nucleotide sequence