Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2093 and HP15_2094 are separated by 9 nucleotides HP15_2094 and HP15_2095 are separated by 159 nucleotides HP15_2095 and HP15_2096 are separated by 11 nucleotides HP15_2096 and HP15_2097 are separated by 95 nucleotides
HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613
_2093
HP15_2094: HP15_2094 - glutathione peroxidase, at 2,193,623 to 2,194,207
_2094
HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581
_2095
HP15_2096: HP15_2096 - conserved hypothetical protein, at 2,195,593 to 2,196,063
_2096
HP15_2097: HP15_2097 - protease HtpX-like protein, at 2,196,159 to 2,197,040
_2097
Position (kb)
2194
2195
2196 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2193.387 kb on - strand at 2193.621 kb on + strand at 2193.722 kb on - strand, within HP15_2094 at 2193.755 kb on + strand, within HP15_2094 at 2193.866 kb on + strand, within HP15_2094 at 2193.879 kb on - strand, within HP15_2094 at 2193.934 kb on - strand, within HP15_2094 at 2194.058 kb on - strand, within HP15_2094 at 2194.156 kb on + strand at 2194.158 kb on + strand at 2194.166 kb on - strand at 2194.435 kb on - strand at 2194.569 kb on + strand, within HP15_2095 at 2194.738 kb on - strand, within HP15_2095 at 2194.793 kb on + strand, within HP15_2095 at 2194.920 kb on + strand, within HP15_2095 at 2194.971 kb on + strand, within HP15_2095 at 2195.018 kb on + strand, within HP15_2095 at 2195.088 kb on - strand, within HP15_2095 at 2195.122 kb on - strand, within HP15_2095 at 2195.392 kb on + strand, within HP15_2095 at 2195.728 kb on - strand, within HP15_2096 at 2195.728 kb on - strand, within HP15_2096 at 2195.821 kb on + strand, within HP15_2096 at 2195.829 kb on - strand, within HP15_2096 at 2195.829 kb on - strand, within HP15_2096 at 2195.934 kb on + strand, within HP15_2096 at 2195.955 kb on + strand, within HP15_2096 at 2196.109 kb on + strand at 2196.211 kb on + strand at 2196.264 kb on - strand, within HP15_2097
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 2,193,387 - -1.3 2,193,621 + -0.5 2,193,722 - HP15_2094 0.17 -0.5 2,193,755 + HP15_2094 0.23 -1.1 2,193,866 + HP15_2094 0.42 +0.6 2,193,879 - HP15_2094 0.44 +0.3 2,193,934 - HP15_2094 0.53 -1.1 2,194,058 - HP15_2094 0.74 -0.4 2,194,156 + +0.8 2,194,158 + +0.2 2,194,166 - +0.7 2,194,435 - -3.0 2,194,569 + HP15_2095 0.17 +1.9 2,194,738 - HP15_2095 0.31 -1.0 2,194,793 + HP15_2095 0.35 -1.8 2,194,920 + HP15_2095 0.46 -2.2 2,194,971 + HP15_2095 0.50 -0.7 2,195,018 + HP15_2095 0.54 -1.0 2,195,088 - HP15_2095 0.59 -1.3 2,195,122 - HP15_2095 0.62 -1.1 2,195,392 + HP15_2095 0.84 +0.1 2,195,728 - HP15_2096 0.29 -1.2 2,195,728 - HP15_2096 0.29 +0.0 2,195,821 + HP15_2096 0.48 +0.5 2,195,829 - HP15_2096 0.50 +0.1 2,195,829 - HP15_2096 0.50 +0.1 2,195,934 + HP15_2096 0.72 +0.2 2,195,955 + HP15_2096 0.77 +0.2 2,196,109 + +0.5 2,196,211 + -0.5 2,196,264 - HP15_2097 0.12 -0.2
Or see this region's nucleotide sequence