Strain Fitness in Marinobacter adhaerens HP15 around HP15_1934

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1932 and HP15_1933 are separated by 62 nucleotidesHP15_1933 and HP15_1934 are separated by 111 nucleotidesHP15_1934 and HP15_1935 are separated by 383 nucleotides HP15_1932: HP15_1932 - methylisocitrate lyase 2, at 2,051,366 to 2,052,253 _1932 HP15_1933: HP15_1933 - transcriptional regulator, GntR family, at 2,052,316 to 2,052,996 _1933 HP15_1934: HP15_1934 - periplasmic glucan biosynthesis protein MdoG, at 2,053,108 to 2,054,694 _1934 HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914 _1935 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -1 0 1at 2052.481 kb on - strand, within HP15_1933at 2052.494 kb on + strand, within HP15_1933at 2052.584 kb on + strand, within HP15_1933at 2052.624 kb on - strand, within HP15_1933at 2052.840 kb on - strand, within HP15_1933at 2052.850 kb on - strand, within HP15_1933at 2052.962 kb on + strandat 2052.970 kb on - strandat 2053.193 kb on - strandat 2053.235 kb on + strandat 2053.314 kb on - strand, within HP15_1934at 2053.314 kb on - strand, within HP15_1934at 2053.330 kb on - strand, within HP15_1934at 2053.428 kb on + strand, within HP15_1934at 2053.492 kb on + strand, within HP15_1934at 2053.513 kb on - strand, within HP15_1934at 2053.581 kb on - strand, within HP15_1934at 2053.610 kb on - strand, within HP15_1934at 2053.610 kb on - strand, within HP15_1934at 2053.626 kb on + strand, within HP15_1934at 2053.648 kb on - strand, within HP15_1934at 2053.697 kb on + strand, within HP15_1934at 2053.769 kb on + strand, within HP15_1934at 2053.769 kb on + strand, within HP15_1934at 2053.852 kb on + strand, within HP15_1934at 2053.884 kb on + strand, within HP15_1934at 2053.892 kb on + strand, within HP15_1934at 2054.010 kb on + strand, within HP15_1934at 2054.028 kb on - strand, within HP15_1934at 2054.030 kb on + strand, within HP15_1934at 2054.039 kb on - strand, within HP15_1934at 2054.149 kb on + strand, within HP15_1934at 2054.204 kb on + strand, within HP15_1934at 2054.382 kb on + strand, within HP15_1934at 2054.444 kb on + strand, within HP15_1934at 2054.545 kb on + strandat 2054.643 kb on + strandat 2054.669 kb on + strandat 2054.856 kb on + strandat 2054.864 kb on - strandat 2054.911 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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2,052,481 - HP15_1933 0.24 +0.4
2,052,494 + HP15_1933 0.26 +1.3
2,052,584 + HP15_1933 0.39 +1.0
2,052,624 - HP15_1933 0.45 -0.3
2,052,840 - HP15_1933 0.77 -0.3
2,052,850 - HP15_1933 0.78 +0.3
2,052,962 + +0.1
2,052,970 - +0.1
2,053,193 - -0.0
2,053,235 + +0.3
2,053,314 - HP15_1934 0.13 +0.4
2,053,314 - HP15_1934 0.13 -0.3
2,053,330 - HP15_1934 0.14 -0.7
2,053,428 + HP15_1934 0.20 +0.3
2,053,492 + HP15_1934 0.24 -0.3
2,053,513 - HP15_1934 0.26 -0.7
2,053,581 - HP15_1934 0.30 +0.1
2,053,610 - HP15_1934 0.32 +1.3
2,053,610 - HP15_1934 0.32 +0.5
2,053,626 + HP15_1934 0.33 -0.2
2,053,648 - HP15_1934 0.34 -0.2
2,053,697 + HP15_1934 0.37 -0.7
2,053,769 + HP15_1934 0.42 +0.7
2,053,769 + HP15_1934 0.42 +0.0
2,053,852 + HP15_1934 0.47 -1.1
2,053,884 + HP15_1934 0.49 -0.9
2,053,892 + HP15_1934 0.49 +0.4
2,054,010 + HP15_1934 0.57 -0.0
2,054,028 - HP15_1934 0.58 -0.1
2,054,030 + HP15_1934 0.58 +0.7
2,054,039 - HP15_1934 0.59 +0.4
2,054,149 + HP15_1934 0.66 -0.1
2,054,204 + HP15_1934 0.69 -1.3
2,054,382 + HP15_1934 0.80 -0.7
2,054,444 + HP15_1934 0.84 +1.6
2,054,545 + -0.6
2,054,643 + -0.2
2,054,669 + +0.0
2,054,856 + +0.1
2,054,864 - -0.2
2,054,911 + +0.7

Or see this region's nucleotide sequence