Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1813 and HP15_1814 are separated by 205 nucleotides HP15_1814 and HP15_1815 are separated by 27 nucleotides HP15_1815 and HP15_1816 overlap by 4 nucleotides
HP15_1813: HP15_1813 - conserved hypothetical protein, at 1,906,686 to 1,908,479
_1813
HP15_1814: HP15_1814 - phospho-2-dehydro-3-heoxyheptonate aldolase, at 1,908,685 to 1,909,761
_1814
HP15_1815: HP15_1815 - siroheme synthase, at 1,909,789 to 1,910,646
_1815
HP15_1816: HP15_1816 - seryl-tRNA synthetase, at 1,910,643 to 1,911,917
_1816
Position (kb)
1908
1909
1910 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1907.831 kb on - strand, within HP15_1813 at 1907.831 kb on - strand, within HP15_1813 at 1908.095 kb on + strand, within HP15_1813 at 1908.101 kb on - strand, within HP15_1813 at 1908.103 kb on - strand, within HP15_1813 at 1908.103 kb on - strand, within HP15_1813 at 1908.306 kb on + strand at 1908.335 kb on + strand at 1908.343 kb on - strand at 1908.422 kb on + strand at 1908.556 kb on + strand at 1908.615 kb on - strand at 1908.725 kb on + strand at 1908.740 kb on + strand at 1909.222 kb on - strand, within HP15_1814 at 1909.295 kb on + strand, within HP15_1814 at 1909.462 kb on - strand, within HP15_1814 at 1909.557 kb on - strand, within HP15_1814 at 1909.817 kb on + strand at 1909.907 kb on + strand, within HP15_1815 at 1910.346 kb on + strand, within HP15_1815 at 1910.350 kb on - strand, within HP15_1815 at 1910.499 kb on + strand, within HP15_1815 at 1910.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 1,907,831 - HP15_1813 0.64 +0.3 1,907,831 - HP15_1813 0.64 -0.2 1,908,095 + HP15_1813 0.79 +0.9 1,908,101 - HP15_1813 0.79 -0.4 1,908,103 - HP15_1813 0.79 +0.9 1,908,103 - HP15_1813 0.79 +0.7 1,908,306 + -0.0 1,908,335 + +0.8 1,908,343 - -0.4 1,908,422 + -0.1 1,908,556 + +0.6 1,908,615 - -1.5 1,908,725 + -0.8 1,908,740 + +0.3 1,909,222 - HP15_1814 0.50 -1.1 1,909,295 + HP15_1814 0.57 -0.4 1,909,462 - HP15_1814 0.72 -1.3 1,909,557 - HP15_1814 0.81 -1.1 1,909,817 + -0.2 1,909,907 + HP15_1815 0.14 -3.7 1,910,346 + HP15_1815 0.65 -3.1 1,910,350 - HP15_1815 0.65 -4.5 1,910,499 + HP15_1815 0.83 -4.3 1,910,571 + -5.0
Or see this region's nucleotide sequence