Strain Fitness in Marinobacter adhaerens HP15 around HP15_1814

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1813 and HP15_1814 are separated by 205 nucleotidesHP15_1814 and HP15_1815 are separated by 27 nucleotidesHP15_1815 and HP15_1816 overlap by 4 nucleotides HP15_1813: HP15_1813 - conserved hypothetical protein, at 1,906,686 to 1,908,479 _1813 HP15_1814: HP15_1814 - phospho-2-dehydro-3-heoxyheptonate aldolase, at 1,908,685 to 1,909,761 _1814 HP15_1815: HP15_1815 - siroheme synthase, at 1,909,789 to 1,910,646 _1815 HP15_1816: HP15_1816 - seryl-tRNA synthetase, at 1,910,643 to 1,911,917 _1816 Position (kb) 1908 1909 1910Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1907.831 kb on - strand, within HP15_1813at 1907.831 kb on - strand, within HP15_1813at 1908.095 kb on + strand, within HP15_1813at 1908.101 kb on - strand, within HP15_1813at 1908.103 kb on - strand, within HP15_1813at 1908.103 kb on - strand, within HP15_1813at 1908.306 kb on + strandat 1908.335 kb on + strandat 1908.343 kb on - strandat 1908.422 kb on + strandat 1908.556 kb on + strandat 1908.615 kb on - strandat 1908.725 kb on + strandat 1908.740 kb on + strandat 1909.222 kb on - strand, within HP15_1814at 1909.295 kb on + strand, within HP15_1814at 1909.462 kb on - strand, within HP15_1814at 1909.557 kb on - strand, within HP15_1814at 1909.817 kb on + strandat 1909.907 kb on + strand, within HP15_1815at 1910.346 kb on + strand, within HP15_1815at 1910.350 kb on - strand, within HP15_1815at 1910.499 kb on + strand, within HP15_1815at 1910.571 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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1,907,831 - HP15_1813 0.64 +0.3
1,907,831 - HP15_1813 0.64 -0.2
1,908,095 + HP15_1813 0.79 +0.9
1,908,101 - HP15_1813 0.79 -0.4
1,908,103 - HP15_1813 0.79 +0.9
1,908,103 - HP15_1813 0.79 +0.7
1,908,306 + -0.0
1,908,335 + +0.8
1,908,343 - -0.4
1,908,422 + -0.1
1,908,556 + +0.6
1,908,615 - -1.5
1,908,725 + -0.8
1,908,740 + +0.3
1,909,222 - HP15_1814 0.50 -1.1
1,909,295 + HP15_1814 0.57 -0.4
1,909,462 - HP15_1814 0.72 -1.3
1,909,557 - HP15_1814 0.81 -1.1
1,909,817 + -0.2
1,909,907 + HP15_1815 0.14 -3.7
1,910,346 + HP15_1815 0.65 -3.1
1,910,350 - HP15_1815 0.65 -4.5
1,910,499 + HP15_1815 0.83 -4.3
1,910,571 + -5.0

Or see this region's nucleotide sequence