Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1702 and HP15_1703 are separated by 26 nucleotides HP15_1703 and HP15_1704 are separated by 74 nucleotides HP15_1704 and HP15_1705 are separated by 145 nucleotides
HP15_1702: HP15_1702 - protein containing DUF785, at 1,796,452 to 1,797,051
_1702
HP15_1703: HP15_1703 - acyl carrier protein phosphodiesterase, at 1,797,078 to 1,797,602
_1703
HP15_1704: HP15_1704 - conserved hypothetical protein, secreted, at 1,797,677 to 1,798,219
_1704
HP15_1705: HP15_1705 - potassium uptake protein, TrkH family, at 1,798,365 to 1,799,882
_1705
Position (kb)
1797
1798 Strain fitness (log2 ratio)
-1
0
1 at 1796.081 kb on + strand at 1796.406 kb on - strand at 1796.972 kb on - strand, within HP15_1702 at 1796.972 kb on - strand, within HP15_1702 at 1797.216 kb on + strand, within HP15_1703 at 1797.261 kb on - strand, within HP15_1703 at 1797.465 kb on - strand, within HP15_1703 at 1797.614 kb on - strand at 1798.103 kb on + strand, within HP15_1704 at 1798.108 kb on + strand, within HP15_1704 at 1798.111 kb on - strand, within HP15_1704 at 1798.113 kb on + strand, within HP15_1704 at 1798.121 kb on - strand, within HP15_1704 at 1798.254 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.357 kb on + strand at 1798.365 kb on - strand at 1798.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 1,796,081 + -0.2 1,796,406 - -0.3 1,796,972 - HP15_1702 0.87 -0.7 1,796,972 - HP15_1702 0.87 -0.2 1,797,216 + HP15_1703 0.26 -0.4 1,797,261 - HP15_1703 0.35 -0.7 1,797,465 - HP15_1703 0.74 -0.7 1,797,614 - +0.4 1,798,103 + HP15_1704 0.78 +0.0 1,798,108 + HP15_1704 0.79 +0.4 1,798,111 - HP15_1704 0.80 -0.7 1,798,113 + HP15_1704 0.80 -0.5 1,798,121 - HP15_1704 0.82 +0.8 1,798,254 + -0.1 1,798,357 + -0.7 1,798,357 + +0.4 1,798,357 + -0.7 1,798,357 + -0.4 1,798,357 + +0.9 1,798,357 + +0.5 1,798,357 + +0.7 1,798,357 + -0.3 1,798,365 - -0.0 1,798,365 - -0.5
Or see this region's nucleotide sequence