Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_tRNA29 and HP15_1507 are separated by 240 nucleotides HP15_1507 and HP15_1508 are separated by 50 nucleotides HP15_1508 and HP15_1509 are separated by 185 nucleotides HP15_1509 and HP15_1510 are separated by 61 nucleotides
HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147
_1506
HP15_tRNA29: HP15_tRNA29 - tRNA-Gly, at 1,582,884 to 1,582,959
_tRNA29
HP15_1507: HP15_1507 - MOSC domain protein beta barrel domain protein, at 1,583,200 to 1,583,889
_1507
HP15_1508: HP15_1508 - ABC transporter ATPase component, at 1,583,940 to 1,585,850
_1508
HP15_1509: HP15_1509 - conserved hypothetical protein, at 1,586,036 to 1,586,515
_1509
HP15_1510: HP15_1510 - UspA domain protein, at 1,586,577 to 1,587,008
_1510
Position (kb)
1583
1584
1585
1586 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1583.053 kb on - strand at 1583.149 kb on - strand at 1583.369 kb on + strand, within HP15_1507 at 1583.462 kb on - strand, within HP15_1507 at 1583.462 kb on - strand, within HP15_1507 at 1583.609 kb on - strand, within HP15_1507 at 1583.641 kb on + strand, within HP15_1507 at 1583.671 kb on + strand, within HP15_1507 at 1583.711 kb on + strand, within HP15_1507 at 1583.719 kb on - strand, within HP15_1507 at 1583.779 kb on - strand, within HP15_1507 at 1583.786 kb on + strand, within HP15_1507 at 1583.960 kb on + strand at 1583.968 kb on - strand at 1583.995 kb on - strand at 1584.096 kb on + strand at 1584.288 kb on - strand, within HP15_1508 at 1584.328 kb on - strand, within HP15_1508 at 1584.328 kb on - strand, within HP15_1508 at 1584.361 kb on - strand, within HP15_1508 at 1584.431 kb on + strand, within HP15_1508 at 1584.476 kb on + strand, within HP15_1508 at 1584.558 kb on - strand, within HP15_1508 at 1584.699 kb on - strand, within HP15_1508 at 1584.851 kb on - strand, within HP15_1508 at 1585.621 kb on - strand, within HP15_1508 at 1585.633 kb on + strand, within HP15_1508 at 1585.689 kb on - strand at 1585.795 kb on + strand at 1585.889 kb on - strand at 1586.183 kb on - strand, within HP15_1509 at 1586.226 kb on - strand, within HP15_1509 at 1586.297 kb on + strand, within HP15_1509 at 1586.333 kb on - strand, within HP15_1509 at 1586.333 kb on - strand, within HP15_1509 at 1586.337 kb on - strand, within HP15_1509 at 1586.346 kb on + strand, within HP15_1509 at 1586.380 kb on + strand, within HP15_1509 at 1586.398 kb on - strand, within HP15_1509 at 1586.619 kb on - strand at 1586.716 kb on - strand, within HP15_1510
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 1,583,053 - +0.8 1,583,149 - -0.4 1,583,369 + HP15_1507 0.24 -0.5 1,583,462 - HP15_1507 0.38 +0.0 1,583,462 - HP15_1507 0.38 +0.4 1,583,609 - HP15_1507 0.59 -0.3 1,583,641 + HP15_1507 0.64 +0.2 1,583,671 + HP15_1507 0.68 +0.1 1,583,711 + HP15_1507 0.74 +0.7 1,583,719 - HP15_1507 0.75 -0.0 1,583,779 - HP15_1507 0.84 -0.9 1,583,786 + HP15_1507 0.85 +0.8 1,583,960 + -0.5 1,583,968 - -0.1 1,583,995 - +1.0 1,584,096 + +0.9 1,584,288 - HP15_1508 0.18 +0.1 1,584,328 - HP15_1508 0.20 +1.7 1,584,328 - HP15_1508 0.20 +1.8 1,584,361 - HP15_1508 0.22 -0.1 1,584,431 + HP15_1508 0.26 +0.8 1,584,476 + HP15_1508 0.28 +1.0 1,584,558 - HP15_1508 0.32 +1.6 1,584,699 - HP15_1508 0.40 +0.2 1,584,851 - HP15_1508 0.48 -1.8 1,585,621 - HP15_1508 0.88 -2.1 1,585,633 + HP15_1508 0.89 +0.5 1,585,689 - -1.3 1,585,795 + +0.6 1,585,889 - +0.2 1,586,183 - HP15_1509 0.31 -0.5 1,586,226 - HP15_1509 0.40 +1.2 1,586,297 + HP15_1509 0.54 +1.3 1,586,333 - HP15_1509 0.62 -0.8 1,586,333 - HP15_1509 0.62 -0.9 1,586,337 - HP15_1509 0.63 +0.7 1,586,346 + HP15_1509 0.65 -0.3 1,586,380 + HP15_1509 0.72 +0.1 1,586,398 - HP15_1509 0.75 -0.8 1,586,619 - +0.3 1,586,716 - HP15_1510 0.32 +1.1
Or see this region's nucleotide sequence