Strain Fitness in Marinobacter adhaerens HP15 around HP15_1508

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_tRNA29 and HP15_1507 are separated by 240 nucleotidesHP15_1507 and HP15_1508 are separated by 50 nucleotidesHP15_1508 and HP15_1509 are separated by 185 nucleotidesHP15_1509 and HP15_1510 are separated by 61 nucleotides HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147 _1506 HP15_tRNA29: HP15_tRNA29 - tRNA-Gly, at 1,582,884 to 1,582,959 _tRNA29 HP15_1507: HP15_1507 - MOSC domain protein beta barrel domain protein, at 1,583,200 to 1,583,889 _1507 HP15_1508: HP15_1508 - ABC transporter ATPase component, at 1,583,940 to 1,585,850 _1508 HP15_1509: HP15_1509 - conserved hypothetical protein, at 1,586,036 to 1,586,515 _1509 HP15_1510: HP15_1510 - UspA domain protein, at 1,586,577 to 1,587,008 _1510 Position (kb) 1583 1584 1585 1586Strain fitness (log2 ratio) -2 -1 0 1 2at 1583.053 kb on - strandat 1583.149 kb on - strandat 1583.369 kb on + strand, within HP15_1507at 1583.462 kb on - strand, within HP15_1507at 1583.462 kb on - strand, within HP15_1507at 1583.609 kb on - strand, within HP15_1507at 1583.641 kb on + strand, within HP15_1507at 1583.671 kb on + strand, within HP15_1507at 1583.711 kb on + strand, within HP15_1507at 1583.719 kb on - strand, within HP15_1507at 1583.779 kb on - strand, within HP15_1507at 1583.786 kb on + strand, within HP15_1507at 1583.960 kb on + strandat 1583.968 kb on - strandat 1583.995 kb on - strandat 1584.096 kb on + strandat 1584.288 kb on - strand, within HP15_1508at 1584.328 kb on - strand, within HP15_1508at 1584.328 kb on - strand, within HP15_1508at 1584.361 kb on - strand, within HP15_1508at 1584.431 kb on + strand, within HP15_1508at 1584.476 kb on + strand, within HP15_1508at 1584.558 kb on - strand, within HP15_1508at 1584.699 kb on - strand, within HP15_1508at 1584.851 kb on - strand, within HP15_1508at 1585.621 kb on - strand, within HP15_1508at 1585.633 kb on + strand, within HP15_1508at 1585.689 kb on - strandat 1585.795 kb on + strandat 1585.889 kb on - strandat 1586.183 kb on - strand, within HP15_1509at 1586.226 kb on - strand, within HP15_1509at 1586.297 kb on + strand, within HP15_1509at 1586.333 kb on - strand, within HP15_1509at 1586.333 kb on - strand, within HP15_1509at 1586.337 kb on - strand, within HP15_1509at 1586.346 kb on + strand, within HP15_1509at 1586.380 kb on + strand, within HP15_1509at 1586.398 kb on - strand, within HP15_1509at 1586.619 kb on - strandat 1586.716 kb on - strand, within HP15_1510

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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1,583,053 - +0.8
1,583,149 - -0.4
1,583,369 + HP15_1507 0.24 -0.5
1,583,462 - HP15_1507 0.38 +0.0
1,583,462 - HP15_1507 0.38 +0.4
1,583,609 - HP15_1507 0.59 -0.3
1,583,641 + HP15_1507 0.64 +0.2
1,583,671 + HP15_1507 0.68 +0.1
1,583,711 + HP15_1507 0.74 +0.7
1,583,719 - HP15_1507 0.75 -0.0
1,583,779 - HP15_1507 0.84 -0.9
1,583,786 + HP15_1507 0.85 +0.8
1,583,960 + -0.5
1,583,968 - -0.1
1,583,995 - +1.0
1,584,096 + +0.9
1,584,288 - HP15_1508 0.18 +0.1
1,584,328 - HP15_1508 0.20 +1.7
1,584,328 - HP15_1508 0.20 +1.8
1,584,361 - HP15_1508 0.22 -0.1
1,584,431 + HP15_1508 0.26 +0.8
1,584,476 + HP15_1508 0.28 +1.0
1,584,558 - HP15_1508 0.32 +1.6
1,584,699 - HP15_1508 0.40 +0.2
1,584,851 - HP15_1508 0.48 -1.8
1,585,621 - HP15_1508 0.88 -2.1
1,585,633 + HP15_1508 0.89 +0.5
1,585,689 - -1.3
1,585,795 + +0.6
1,585,889 - +0.2
1,586,183 - HP15_1509 0.31 -0.5
1,586,226 - HP15_1509 0.40 +1.2
1,586,297 + HP15_1509 0.54 +1.3
1,586,333 - HP15_1509 0.62 -0.8
1,586,333 - HP15_1509 0.62 -0.9
1,586,337 - HP15_1509 0.63 +0.7
1,586,346 + HP15_1509 0.65 -0.3
1,586,380 + HP15_1509 0.72 +0.1
1,586,398 - HP15_1509 0.75 -0.8
1,586,619 - +0.3
1,586,716 - HP15_1510 0.32 +1.1

Or see this region's nucleotide sequence