Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20545

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20540 and BWI76_RS20545 are separated by 30 nucleotidesBWI76_RS20545 and BWI76_RS20550 are separated by 202 nucleotidesBWI76_RS20550 and BWI76_RS20555 are separated by 41 nucleotidesBWI76_RS20555 and BWI76_RS20560 are separated by 219 nucleotidesBWI76_RS20560 and BWI76_RS20565 are separated by 4 nucleotides BWI76_RS20540: BWI76_RS20540 - NupC/NupG family nucleoside CNT transporter, at 4,302,482 to 4,303,684 _RS20540 BWI76_RS20545: BWI76_RS20545 - sensor domain-containing phosphodiesterase, at 4,303,715 to 4,305,895 _RS20545 BWI76_RS20550: BWI76_RS20550 - tRNA-Ala, at 4,306,098 to 4,306,173 _RS20550 BWI76_RS20555: BWI76_RS20555 - tRNA-Ala, at 4,306,215 to 4,306,290 _RS20555 BWI76_RS20560: BWI76_RS20560 - hypothetical protein, at 4,306,510 to 4,306,863 _RS20560 BWI76_RS20565: BWI76_RS20565 - hypothetical protein, at 4,306,868 to 4,307,263 _RS20565 Position (kb) 4303 4304 4305 4306Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4302.737 kb on + strand, within BWI76_RS20540at 4302.854 kb on - strand, within BWI76_RS20540at 4302.889 kb on + strand, within BWI76_RS20540at 4303.175 kb on + strand, within BWI76_RS20540at 4303.252 kb on + strand, within BWI76_RS20540at 4303.287 kb on + strand, within BWI76_RS20540at 4303.366 kb on + strand, within BWI76_RS20540at 4303.640 kb on - strandat 4303.640 kb on - strandat 4304.091 kb on - strand, within BWI76_RS20545at 4304.091 kb on - strand, within BWI76_RS20545at 4304.118 kb on + strand, within BWI76_RS20545at 4304.153 kb on - strand, within BWI76_RS20545at 4304.164 kb on + strand, within BWI76_RS20545at 4304.164 kb on + strand, within BWI76_RS20545at 4304.172 kb on - strand, within BWI76_RS20545at 4304.172 kb on - strand, within BWI76_RS20545at 4304.174 kb on - strand, within BWI76_RS20545at 4304.187 kb on - strandat 4304.394 kb on - strand, within BWI76_RS20545at 4304.510 kb on - strand, within BWI76_RS20545at 4304.523 kb on + strand, within BWI76_RS20545at 4304.682 kb on + strand, within BWI76_RS20545at 4304.714 kb on - strand, within BWI76_RS20545at 4304.727 kb on - strand, within BWI76_RS20545at 4304.729 kb on - strand, within BWI76_RS20545at 4304.749 kb on + strand, within BWI76_RS20545at 4304.778 kb on - strand, within BWI76_RS20545at 4304.862 kb on - strand, within BWI76_RS20545at 4304.888 kb on + strand, within BWI76_RS20545at 4305.005 kb on + strand, within BWI76_RS20545at 4305.005 kb on + strand, within BWI76_RS20545at 4305.089 kb on + strand, within BWI76_RS20545at 4305.116 kb on + strand, within BWI76_RS20545at 4305.132 kb on - strand, within BWI76_RS20545at 4305.132 kb on - strand, within BWI76_RS20545at 4305.133 kb on + strand, within BWI76_RS20545at 4305.134 kb on + strand, within BWI76_RS20545at 4305.142 kb on - strand, within BWI76_RS20545at 4305.146 kb on - strand, within BWI76_RS20545at 4305.204 kb on + strand, within BWI76_RS20545at 4305.204 kb on + strand, within BWI76_RS20545at 4305.204 kb on + strand, within BWI76_RS20545at 4305.204 kb on + strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.212 kb on - strand, within BWI76_RS20545at 4305.246 kb on - strand, within BWI76_RS20545at 4305.303 kb on - strandat 4305.303 kb on - strand, within BWI76_RS20545at 4305.389 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strandat 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.474 kb on + strand, within BWI76_RS20545at 4305.479 kb on + strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.482 kb on - strand, within BWI76_RS20545at 4305.490 kb on + strand, within BWI76_RS20545at 4305.544 kb on + strand, within BWI76_RS20545at 4305.545 kb on - strandat 4305.549 kb on - strand, within BWI76_RS20545at 4305.572 kb on - strand, within BWI76_RS20545at 4305.573 kb on + strand, within BWI76_RS20545at 4305.595 kb on - strand, within BWI76_RS20545at 4305.658 kb on - strand, within BWI76_RS20545at 4305.664 kb on + strand, within BWI76_RS20545at 4305.683 kb on - strandat 4305.753 kb on - strandat 4305.753 kb on - strandat 4305.760 kb on - strandat 4305.837 kb on + strandat 4305.878 kb on - strandat 4305.956 kb on + strandat 4306.006 kb on + strandat 4306.019 kb on - strandat 4306.021 kb on - strandat 4306.344 kb on + strandat 4306.509 kb on - strandat 4306.531 kb on - strandat 4306.563 kb on - strand, within BWI76_RS20560at 4306.637 kb on - strand, within BWI76_RS20560at 4306.639 kb on - strand, within BWI76_RS20560

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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4,302,737 + BWI76_RS20540 0.21 -0.6
4,302,854 - BWI76_RS20540 0.31 +0.1
4,302,889 + BWI76_RS20540 0.34 -0.5
4,303,175 + BWI76_RS20540 0.58 +0.9
4,303,252 + BWI76_RS20540 0.64 -0.5
4,303,287 + BWI76_RS20540 0.67 +0.5
4,303,366 + BWI76_RS20540 0.73 -0.3
4,303,640 - +0.3
4,303,640 - -1.8
4,304,091 - BWI76_RS20545 0.17 +0.4
4,304,091 - BWI76_RS20545 0.17 -0.4
4,304,118 + BWI76_RS20545 0.18 -0.3
4,304,153 - BWI76_RS20545 0.20 +0.5
4,304,164 + BWI76_RS20545 0.21 +1.5
4,304,164 + BWI76_RS20545 0.21 -0.1
4,304,172 - BWI76_RS20545 0.21 -0.2
4,304,172 - BWI76_RS20545 0.21 +0.1
4,304,174 - BWI76_RS20545 0.21 -1.3
4,304,187 - +2.1
4,304,394 - BWI76_RS20545 0.31 -1.4
4,304,510 - BWI76_RS20545 0.36 +0.6
4,304,523 + BWI76_RS20545 0.37 +0.1
4,304,682 + BWI76_RS20545 0.44 -0.1
4,304,714 - BWI76_RS20545 0.46 -0.5
4,304,727 - BWI76_RS20545 0.46 -0.8
4,304,729 - BWI76_RS20545 0.46 +0.1
4,304,749 + BWI76_RS20545 0.47 -1.2
4,304,778 - BWI76_RS20545 0.49 -1.9
4,304,862 - BWI76_RS20545 0.53 -0.7
4,304,888 + BWI76_RS20545 0.54 +0.4
4,305,005 + BWI76_RS20545 0.59 -0.6
4,305,005 + BWI76_RS20545 0.59 -2.1
4,305,089 + BWI76_RS20545 0.63 -1.2
4,305,116 + BWI76_RS20545 0.64 -1.1
4,305,132 - BWI76_RS20545 0.65 +0.2
4,305,132 - BWI76_RS20545 0.65 -0.4
4,305,133 + BWI76_RS20545 0.65 +0.3
4,305,134 + BWI76_RS20545 0.65 -1.2
4,305,142 - BWI76_RS20545 0.65 -0.8
4,305,146 - BWI76_RS20545 0.66 -0.4
4,305,204 + BWI76_RS20545 0.68 +0.5
4,305,204 + BWI76_RS20545 0.68 -1.2
4,305,204 + BWI76_RS20545 0.68 +0.7
4,305,204 + BWI76_RS20545 0.68 -0.3
4,305,212 - BWI76_RS20545 0.69 -1.5
4,305,212 - BWI76_RS20545 0.69 -1.3
4,305,212 - BWI76_RS20545 0.69 -1.1
4,305,212 - BWI76_RS20545 0.69 +0.1
4,305,212 - BWI76_RS20545 0.69 -0.6
4,305,212 - BWI76_RS20545 0.69 +1.3
4,305,212 - BWI76_RS20545 0.69 -1.5
4,305,212 - BWI76_RS20545 0.69 -0.7
4,305,212 - BWI76_RS20545 0.69 -1.6
4,305,246 - BWI76_RS20545 0.70 -0.5
4,305,303 - +1.5
4,305,303 - BWI76_RS20545 0.73 +3.1
4,305,389 + BWI76_RS20545 0.77 -2.1
4,305,474 + BWI76_RS20545 0.81 +0.3
4,305,474 + BWI76_RS20545 0.81 -1.7
4,305,474 + BWI76_RS20545 0.81 +1.5
4,305,474 + BWI76_RS20545 0.81 -0.6
4,305,474 + BWI76_RS20545 0.81 -0.1
4,305,474 + BWI76_RS20545 0.81 +0.4
4,305,474 + BWI76_RS20545 0.81 -0.2
4,305,474 + BWI76_RS20545 0.81 +0.3
4,305,474 + BWI76_RS20545 0.81 -0.1
4,305,474 + BWI76_RS20545 0.81 +0.2
4,305,474 + BWI76_RS20545 0.81 +0.2
4,305,474 + BWI76_RS20545 0.81 -0.0
4,305,474 + BWI76_RS20545 0.81 +1.6
4,305,474 + BWI76_RS20545 0.81 -1.7
4,305,474 + +1.1
4,305,474 + BWI76_RS20545 0.81 -0.2
4,305,474 + BWI76_RS20545 0.81 +1.0
4,305,474 + BWI76_RS20545 0.81 +0.1
4,305,479 + BWI76_RS20545 0.81 +0.0
4,305,482 - BWI76_RS20545 0.81 -0.9
4,305,482 - BWI76_RS20545 0.81 -1.3
4,305,482 - BWI76_RS20545 0.81 -0.5
4,305,482 - BWI76_RS20545 0.81 -2.0
4,305,482 - BWI76_RS20545 0.81 -0.5
4,305,482 - BWI76_RS20545 0.81 +1.8
4,305,482 - BWI76_RS20545 0.81 -0.6
4,305,482 - BWI76_RS20545 0.81 +1.1
4,305,482 - BWI76_RS20545 0.81 -2.4
4,305,482 - BWI76_RS20545 0.81 -0.7
4,305,490 + BWI76_RS20545 0.81 -0.1
4,305,544 + BWI76_RS20545 0.84 -0.0
4,305,545 - +1.5
4,305,549 - BWI76_RS20545 0.84 -1.0
4,305,572 - BWI76_RS20545 0.85 -2.7
4,305,573 + BWI76_RS20545 0.85 -0.4
4,305,595 - BWI76_RS20545 0.86 -0.2
4,305,658 - BWI76_RS20545 0.89 +0.1
4,305,664 + BWI76_RS20545 0.89 -2.7
4,305,683 - -0.1
4,305,753 - -0.1
4,305,753 - -1.1
4,305,760 - +0.4
4,305,837 + +1.1
4,305,878 - +0.1
4,305,956 + -0.7
4,306,006 + +0.5
4,306,019 - -0.9
4,306,021 - -0.7
4,306,344 + -0.0
4,306,509 - -0.4
4,306,531 - +0.4
4,306,563 - BWI76_RS20560 0.15 -0.1
4,306,637 - BWI76_RS20560 0.36 -0.2
4,306,639 - BWI76_RS20560 0.36 -0.2

Or see this region's nucleotide sequence