Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18620 and BWI76_RS18625 are separated by 78 nucleotides BWI76_RS18625 and BWI76_RS18630 are separated by 106 nucleotides
BWI76_RS18620: BWI76_RS18620 - L,D-transpeptidase, at 3,860,807 to 3,861,748
_RS18620
BWI76_RS18625: BWI76_RS18625 - CysB family transcriptional regulator, at 3,861,827 to 3,862,777
_RS18625
BWI76_RS18630: BWI76_RS18630 - nitrogen assimilation transcriptional regulator, at 3,862,884 to 3,863,801
_RS18630
Position (kb)
3861
3862
3863 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3860.867 kb on + strand at 3860.966 kb on + strand, within BWI76_RS18620 at 3861.131 kb on + strand, within BWI76_RS18620 at 3861.139 kb on - strand, within BWI76_RS18620 at 3861.321 kb on + strand, within BWI76_RS18620 at 3861.481 kb on + strand, within BWI76_RS18620 at 3861.506 kb on + strand, within BWI76_RS18620 at 3861.526 kb on + strand, within BWI76_RS18620 at 3861.534 kb on - strand, within BWI76_RS18620 at 3861.534 kb on - strand, within BWI76_RS18620 at 3861.534 kb on - strand, within BWI76_RS18620 at 3861.535 kb on - strand, within BWI76_RS18620 at 3861.575 kb on + strand, within BWI76_RS18620 at 3861.594 kb on + strand at 3861.675 kb on + strand at 3861.723 kb on + strand at 3861.723 kb on + strand at 3861.839 kb on + strand at 3861.980 kb on - strand, within BWI76_RS18625 at 3862.062 kb on - strand, within BWI76_RS18625 at 3862.090 kb on - strand, within BWI76_RS18625 at 3862.142 kb on + strand, within BWI76_RS18625 at 3862.148 kb on + strand, within BWI76_RS18625 at 3862.150 kb on - strand, within BWI76_RS18625 at 3862.150 kb on - strand, within BWI76_RS18625 at 3862.399 kb on - strand, within BWI76_RS18625 at 3862.400 kb on - strand, within BWI76_RS18625 at 3862.434 kb on - strand, within BWI76_RS18625 at 3862.457 kb on + strand, within BWI76_RS18625 at 3862.472 kb on + strand, within BWI76_RS18625 at 3862.485 kb on - strand, within BWI76_RS18625 at 3862.584 kb on + strand, within BWI76_RS18625 at 3862.685 kb on + strand at 3862.695 kb on + strand at 3862.703 kb on - strand at 3862.724 kb on - strand at 3862.776 kb on + strand at 3862.793 kb on + strand at 3862.962 kb on + strand at 3862.962 kb on + strand at 3862.970 kb on - strand at 3862.994 kb on + strand, within BWI76_RS18630 at 3863.006 kb on + strand, within BWI76_RS18630 at 3863.016 kb on + strand, within BWI76_RS18630 at 3863.024 kb on - strand, within BWI76_RS18630 at 3863.039 kb on - strand, within BWI76_RS18630 at 3863.054 kb on - strand, within BWI76_RS18630 at 3863.368 kb on + strand, within BWI76_RS18630 at 3863.376 kb on - strand, within BWI76_RS18630 at 3863.423 kb on + strand, within BWI76_RS18630 at 3863.545 kb on - strand, within BWI76_RS18630 at 3863.591 kb on - strand, within BWI76_RS18630 at 3863.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,860,867 + +0.9 3,860,966 + BWI76_RS18620 0.17 -2.6 3,861,131 + BWI76_RS18620 0.34 +0.3 3,861,139 - BWI76_RS18620 0.35 +0.7 3,861,321 + BWI76_RS18620 0.55 +1.6 3,861,481 + BWI76_RS18620 0.72 +1.3 3,861,506 + BWI76_RS18620 0.74 +0.6 3,861,526 + BWI76_RS18620 0.76 -0.3 3,861,534 - BWI76_RS18620 0.77 -2.0 3,861,534 - BWI76_RS18620 0.77 +0.4 3,861,534 - BWI76_RS18620 0.77 -0.4 3,861,535 - BWI76_RS18620 0.77 +0.1 3,861,575 + BWI76_RS18620 0.82 -0.7 3,861,594 + -0.6 3,861,675 + -0.2 3,861,723 + +2.0 3,861,723 + +0.6 3,861,839 + -0.8 3,861,980 - BWI76_RS18625 0.16 +0.1 3,862,062 - BWI76_RS18625 0.25 +0.2 3,862,090 - BWI76_RS18625 0.28 -0.1 3,862,142 + BWI76_RS18625 0.33 -0.1 3,862,148 + BWI76_RS18625 0.34 -0.3 3,862,150 - BWI76_RS18625 0.34 -0.1 3,862,150 - BWI76_RS18625 0.34 +0.8 3,862,399 - BWI76_RS18625 0.60 -0.0 3,862,400 - BWI76_RS18625 0.60 -0.1 3,862,434 - BWI76_RS18625 0.64 +2.0 3,862,457 + BWI76_RS18625 0.66 +1.2 3,862,472 + BWI76_RS18625 0.68 -2.1 3,862,485 - BWI76_RS18625 0.69 +0.3 3,862,584 + BWI76_RS18625 0.80 -1.0 3,862,685 + -0.2 3,862,695 + +0.2 3,862,703 - -0.2 3,862,724 - +0.2 3,862,776 + -1.7 3,862,793 + -1.3 3,862,962 + -0.7 3,862,962 + -1.6 3,862,970 - -3.2 3,862,994 + BWI76_RS18630 0.12 -1.9 3,863,006 + BWI76_RS18630 0.13 -3.1 3,863,016 + BWI76_RS18630 0.14 -2.0 3,863,024 - BWI76_RS18630 0.15 -1.2 3,863,039 - BWI76_RS18630 0.17 -3.4 3,863,054 - BWI76_RS18630 0.19 -1.7 3,863,368 + BWI76_RS18630 0.53 -2.9 3,863,376 - BWI76_RS18630 0.54 +1.0 3,863,423 + BWI76_RS18630 0.59 -1.0 3,863,545 - BWI76_RS18630 0.72 -2.7 3,863,591 - BWI76_RS18630 0.77 -2.1 3,863,740 + -2.7
Or see this region's nucleotide sequence