Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10390

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10385 and BWI76_RS10390 are separated by 4 nucleotidesBWI76_RS10390 and BWI76_RS10395 are separated by 518 nucleotides BWI76_RS10385: BWI76_RS10385 - MmgE/PrpD family protein, at 2,198,350 to 2,199,759 _RS10385 BWI76_RS10390: BWI76_RS10390 - amino acid ABC transporter, at 2,199,764 to 2,200,588 _RS10390 BWI76_RS10395: BWI76_RS10395 - cold-shock protein, at 2,201,107 to 2,201,319 _RS10395 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2198.832 kb on - strand, within BWI76_RS10385at 2199.436 kb on - strand, within BWI76_RS10385at 2199.577 kb on + strand, within BWI76_RS10385at 2199.805 kb on + strandat 2199.813 kb on - strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.820 kb on + strandat 2199.828 kb on - strandat 2199.828 kb on - strandat 2199.828 kb on - strandat 2199.828 kb on - strandat 2200.149 kb on - strand, within BWI76_RS10390at 2200.233 kb on + strand, within BWI76_RS10390at 2200.235 kb on - strand, within BWI76_RS10390at 2200.299 kb on + strand, within BWI76_RS10390at 2200.307 kb on - strand, within BWI76_RS10390at 2200.307 kb on - strand, within BWI76_RS10390at 2200.307 kb on - strand, within BWI76_RS10390at 2200.337 kb on + strand, within BWI76_RS10390at 2200.341 kb on - strand, within BWI76_RS10390at 2200.371 kb on - strand, within BWI76_RS10390at 2200.387 kb on + strand, within BWI76_RS10390at 2200.398 kb on + strand, within BWI76_RS10390at 2200.399 kb on + strandat 2200.407 kb on - strand, within BWI76_RS10390at 2200.408 kb on - strand, within BWI76_RS10390at 2200.408 kb on - strand, within BWI76_RS10390at 2200.413 kb on - strand, within BWI76_RS10390at 2200.413 kb on - strand, within BWI76_RS10390at 2200.438 kb on - strand, within BWI76_RS10390at 2200.452 kb on + strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.460 kb on - strand, within BWI76_RS10390at 2200.465 kb on - strand, within BWI76_RS10390at 2200.465 kb on - strand, within BWI76_RS10390at 2200.465 kb on - strandat 2200.467 kb on + strand, within BWI76_RS10390at 2200.470 kb on - strand, within BWI76_RS10390at 2200.470 kb on - strand, within BWI76_RS10390at 2200.475 kb on - strand, within BWI76_RS10390at 2200.475 kb on - strand, within BWI76_RS10390at 2200.514 kb on + strandat 2200.522 kb on - strandat 2200.548 kb on + strandat 2200.598 kb on - strandat 2200.650 kb on - strandat 2200.650 kb on - strandat 2200.694 kb on - strandat 2200.694 kb on - strandat 2200.784 kb on - strandat 2200.866 kb on + strandat 2200.875 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2200.975 kb on + strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.067 kb on - strandat 2201.085 kb on - strandat 2201.114 kb on + strandat 2201.114 kb on + strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.122 kb on - strandat 2201.127 kb on - strandat 2201.178 kb on - strand, within BWI76_RS10395at 2201.183 kb on - strand, within BWI76_RS10395at 2201.190 kb on - strand, within BWI76_RS10395at 2201.248 kb on + strandat 2201.255 kb on - strand, within BWI76_RS10395at 2201.256 kb on - strand, within BWI76_RS10395at 2201.256 kb on - strand, within BWI76_RS10395at 2201.270 kb on - strandat 2201.270 kb on - strand, within BWI76_RS10395at 2201.270 kb on - strand, within BWI76_RS10395at 2201.288 kb on - strand, within BWI76_RS10395at 2201.344 kb on - strandat 2201.344 kb on - strandat 2201.344 kb on - strandat 2201.345 kb on - strandat 2201.345 kb on - strandat 2201.379 kb on - strandat 2201.425 kb on + strandat 2201.425 kb on + strandat 2201.427 kb on + strandat 2201.433 kb on - strandat 2201.471 kb on + strandat 2201.471 kb on + strandat 2201.550 kb on + strandat 2201.573 kb on + strandat 2201.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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2,198,832 - BWI76_RS10385 0.34 +0.3
2,199,436 - BWI76_RS10385 0.77 +0.4
2,199,577 + BWI76_RS10385 0.87 +0.7
2,199,805 + -0.6
2,199,813 - +0.3
2,199,820 + +0.9
2,199,820 + -0.2
2,199,820 + +0.2
2,199,820 + +0.3
2,199,820 + -2.2
2,199,820 + +0.5
2,199,828 - -0.6
2,199,828 - -0.4
2,199,828 - -0.4
2,199,828 - +0.1
2,200,149 - BWI76_RS10390 0.47 +0.1
2,200,233 + BWI76_RS10390 0.57 +0.3
2,200,235 - BWI76_RS10390 0.57 -0.1
2,200,299 + BWI76_RS10390 0.65 +0.0
2,200,307 - BWI76_RS10390 0.66 -0.1
2,200,307 - BWI76_RS10390 0.66 +0.8
2,200,307 - BWI76_RS10390 0.66 -0.2
2,200,337 + BWI76_RS10390 0.69 +0.2
2,200,341 - BWI76_RS10390 0.70 -0.6
2,200,371 - BWI76_RS10390 0.74 +1.0
2,200,387 + BWI76_RS10390 0.76 -0.3
2,200,398 + BWI76_RS10390 0.77 +0.7
2,200,399 + -0.8
2,200,407 - BWI76_RS10390 0.78 -1.1
2,200,408 - BWI76_RS10390 0.78 -0.2
2,200,408 - BWI76_RS10390 0.78 +0.2
2,200,413 - BWI76_RS10390 0.79 +0.1
2,200,413 - BWI76_RS10390 0.79 +0.1
2,200,438 - BWI76_RS10390 0.82 +1.1
2,200,452 + BWI76_RS10390 0.83 -0.5
2,200,460 - BWI76_RS10390 0.84 -1.3
2,200,460 - BWI76_RS10390 0.84 -0.4
2,200,460 - BWI76_RS10390 0.84 -0.8
2,200,460 - BWI76_RS10390 0.84 -0.1
2,200,460 - BWI76_RS10390 0.84 -1.1
2,200,460 - BWI76_RS10390 0.84 -0.2
2,200,460 - BWI76_RS10390 0.84 -0.5
2,200,465 - BWI76_RS10390 0.85 -0.5
2,200,465 - BWI76_RS10390 0.85 +0.6
2,200,465 - -0.0
2,200,467 + BWI76_RS10390 0.85 -1.0
2,200,470 - BWI76_RS10390 0.86 +0.4
2,200,470 - BWI76_RS10390 0.86 +0.4
2,200,475 - BWI76_RS10390 0.86 -0.5
2,200,475 - BWI76_RS10390 0.86 +0.1
2,200,514 + -1.4
2,200,522 - -0.0
2,200,548 + +1.0
2,200,598 - +0.9
2,200,650 - -0.0
2,200,650 - -0.7
2,200,694 - +0.6
2,200,694 - -1.9
2,200,784 - +0.1
2,200,866 + +0.4
2,200,875 + -1.9
2,200,975 + +1.6
2,200,975 + -0.6
2,200,975 + -0.8
2,200,975 + -0.4
2,200,975 + +0.6
2,201,056 - +0.6
2,201,056 - -0.4
2,201,056 - -0.2
2,201,067 - +0.7
2,201,085 - -0.4
2,201,114 + +0.8
2,201,114 + -1.0
2,201,122 - -0.8
2,201,122 - +0.8
2,201,122 - +1.9
2,201,122 - -3.0
2,201,122 - +0.1
2,201,122 - +1.0
2,201,122 - -1.2
2,201,122 - -0.5
2,201,122 - +0.7
2,201,122 - +0.8
2,201,122 - -1.2
2,201,122 - +0.8
2,201,122 - -1.0
2,201,122 - -1.8
2,201,127 - +0.1
2,201,178 - BWI76_RS10395 0.33 -0.1
2,201,183 - BWI76_RS10395 0.36 -0.1
2,201,190 - BWI76_RS10395 0.39 -0.1
2,201,248 + +1.4
2,201,255 - BWI76_RS10395 0.69 -0.6
2,201,256 - BWI76_RS10395 0.70 -0.4
2,201,256 - BWI76_RS10395 0.70 +0.4
2,201,270 - -0.0
2,201,270 - BWI76_RS10395 0.77 +0.6
2,201,270 - BWI76_RS10395 0.77 -0.1
2,201,288 - BWI76_RS10395 0.85 +0.5
2,201,344 - +1.3
2,201,344 - +0.1
2,201,344 - +0.1
2,201,345 - -0.3
2,201,345 - +0.2
2,201,379 - -0.4
2,201,425 + -0.0
2,201,425 + -0.8
2,201,427 + -0.8
2,201,433 - -0.3
2,201,471 + -2.3
2,201,471 + -1.2
2,201,550 + -0.5
2,201,573 + -0.9
2,201,584 + -0.6

Or see this region's nucleotide sequence