Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05965

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05955 and BWI76_RS05960 are separated by 13 nucleotidesBWI76_RS05960 and BWI76_RS05965 overlap by 75 nucleotidesBWI76_RS05965 and BWI76_RS05970 are separated by 70 nucleotidesBWI76_RS05970 and BWI76_RS05975 are separated by 107 nucleotides BWI76_RS05955: BWI76_RS05955 - ABC transporter, at 1,251,790 to 1,252,608 _RS05955 BWI76_RS05960: BWI76_RS05960 - cysteine transport system periplasmic binding protein, at 1,252,622 to 1,253,431 _RS05960 BWI76_RS05965: BWI76_RS05965 - hypothetical protein, at 1,253,357 to 1,253,674 _RS05965 BWI76_RS05970: BWI76_RS05970 - hypothetical protein, at 1,253,745 to 1,253,927 _RS05970 BWI76_RS05975: BWI76_RS05975 - ABC transporter ATP-binding protein, at 1,254,035 to 1,254,730 _RS05975 Position (kb) 1253 1254Strain fitness (log2 ratio) -3 -2 -1 0 1at 1252.419 kb on - strand, within BWI76_RS05955at 1252.780 kb on + strand, within BWI76_RS05960at 1252.804 kb on + strand, within BWI76_RS05960at 1252.812 kb on - strand, within BWI76_RS05960at 1252.871 kb on + strand, within BWI76_RS05960at 1252.871 kb on + strand, within BWI76_RS05960at 1252.879 kb on - strand, within BWI76_RS05960at 1252.904 kb on - strand, within BWI76_RS05960at 1253.034 kb on - strand, within BWI76_RS05960at 1253.154 kb on - strand, within BWI76_RS05960at 1253.193 kb on + strand, within BWI76_RS05960at 1253.211 kb on - strand, within BWI76_RS05960at 1253.254 kb on - strand, within BWI76_RS05960at 1253.284 kb on + strand, within BWI76_RS05960at 1253.364 kb on + strandat 1253.364 kb on + strandat 1253.372 kb on - strandat 1253.372 kb on - strandat 1253.372 kb on - strandat 1253.372 kb on - strandat 1253.604 kb on - strand, within BWI76_RS05965at 1253.606 kb on - strand, within BWI76_RS05965at 1253.699 kb on + strandat 1253.707 kb on - strandat 1253.798 kb on + strand, within BWI76_RS05970at 1253.880 kb on - strand, within BWI76_RS05970at 1254.022 kb on + strandat 1254.030 kb on - strandat 1254.030 kb on - strandat 1254.030 kb on - strandat 1254.062 kb on - strandat 1254.255 kb on - strand, within BWI76_RS05975at 1254.403 kb on + strand, within BWI76_RS05975at 1254.411 kb on - strand, within BWI76_RS05975at 1254.432 kb on + strand, within BWI76_RS05975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,252,419 - BWI76_RS05955 0.77 +0.4
1,252,780 + BWI76_RS05960 0.20 -0.5
1,252,804 + BWI76_RS05960 0.22 +0.4
1,252,812 - BWI76_RS05960 0.23 -0.0
1,252,871 + BWI76_RS05960 0.31 +1.0
1,252,871 + BWI76_RS05960 0.31 +0.3
1,252,879 - BWI76_RS05960 0.32 -0.3
1,252,904 - BWI76_RS05960 0.35 +0.2
1,253,034 - BWI76_RS05960 0.51 -0.1
1,253,154 - BWI76_RS05960 0.66 +0.1
1,253,193 + BWI76_RS05960 0.70 +0.0
1,253,211 - BWI76_RS05960 0.73 +0.2
1,253,254 - BWI76_RS05960 0.78 +1.1
1,253,284 + BWI76_RS05960 0.82 -1.1
1,253,364 + +0.4
1,253,364 + -0.8
1,253,372 - -0.3
1,253,372 - -0.2
1,253,372 - -0.1
1,253,372 - +0.1
1,253,604 - BWI76_RS05965 0.78 -0.5
1,253,606 - BWI76_RS05965 0.78 -0.7
1,253,699 + -0.4
1,253,707 - -0.7
1,253,798 + BWI76_RS05970 0.29 -0.2
1,253,880 - BWI76_RS05970 0.74 -1.1
1,254,022 + +0.5
1,254,030 - -0.3
1,254,030 - -0.8
1,254,030 - -0.5
1,254,062 - +0.1
1,254,255 - BWI76_RS05975 0.32 -0.7
1,254,403 + BWI76_RS05975 0.53 -3.7
1,254,411 - BWI76_RS05975 0.54 -1.7
1,254,432 + BWI76_RS05975 0.57 -2.8

Or see this region's nucleotide sequence