Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3817 and Dshi_3818 are separated by 17 nucleotides Dshi_3818 and Dshi_3819 overlap by 4 nucleotides Dshi_3819 and Dshi_3820 overlap by 1 nucleotides Dshi_3820 and Dshi_3821 are separated by 1 nucleotides
Dshi_3817: Dshi_3817 - beta-ketoadipyl CoA thiolase (RefSeq), at 25,016 to 26,218
_3817
Dshi_3818: Dshi_3818 - phenylacetate-CoA oxygenase, PaaG subunit (RefSeq), at 26,236 to 27,213
_3818
Dshi_3819: Dshi_3819 - phenylacetate-CoA oxygenase, PaaH subunit (RefSeq), at 27,210 to 27,542
_3819
Dshi_3820: Dshi_3820 - phenylacetate-CoA oxygenase, PaaI subunit (RefSeq), at 27,542 to 28,309
_3820
Dshi_3821: Dshi_3821 - phenylacetate-CoA oxygenase, PaaJ subunit (RefSeq), at 28,311 to 28,769
_3821
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 26.212 kb on + strand at 26.325 kb on - strand at 26.365 kb on + strand, within Dshi_3818 at 26.532 kb on - strand, within Dshi_3818 at 26.561 kb on + strand, within Dshi_3818 at 26.611 kb on + strand, within Dshi_3818 at 26.619 kb on - strand, within Dshi_3818 at 26.649 kb on + strand, within Dshi_3818 at 26.722 kb on + strand, within Dshi_3818 at 26.770 kb on - strand, within Dshi_3818 at 26.823 kb on - strand, within Dshi_3818 at 26.874 kb on - strand, within Dshi_3818 at 26.880 kb on - strand, within Dshi_3818 at 26.956 kb on + strand, within Dshi_3818 at 26.963 kb on + strand, within Dshi_3818 at 26.997 kb on + strand, within Dshi_3818 at 27.370 kb on + strand, within Dshi_3819 at 27.598 kb on - strand at 27.600 kb on + strand at 27.670 kb on + strand, within Dshi_3820 at 27.678 kb on - strand, within Dshi_3820 at 27.731 kb on + strand, within Dshi_3820 at 27.737 kb on + strand, within Dshi_3820 at 27.814 kb on + strand, within Dshi_3820 at 27.892 kb on + strand, within Dshi_3820 at 27.955 kb on - strand, within Dshi_3820 at 27.966 kb on - strand, within Dshi_3820 at 28.055 kb on - strand, within Dshi_3820 at 28.163 kb on + strand, within Dshi_3820 at 28.213 kb on - strand, within Dshi_3820 at 28.318 kb on - strand at 28.501 kb on - strand, within Dshi_3821 at 28.513 kb on + strand, within Dshi_3821
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM remove 26,212 + +0.2 26,325 - -1.2 26,365 + Dshi_3818 0.13 +0.0 26,532 - Dshi_3818 0.30 +0.5 26,561 + Dshi_3818 0.33 +0.6 26,611 + Dshi_3818 0.38 -0.7 26,619 - Dshi_3818 0.39 -0.0 26,649 + Dshi_3818 0.42 +0.5 26,722 + Dshi_3818 0.50 -0.2 26,770 - Dshi_3818 0.55 +0.0 26,823 - Dshi_3818 0.60 -2.0 26,874 - Dshi_3818 0.65 +0.3 26,880 - Dshi_3818 0.66 -0.3 26,956 + Dshi_3818 0.74 -0.7 26,963 + Dshi_3818 0.74 -0.9 26,997 + Dshi_3818 0.78 -0.4 27,370 + Dshi_3819 0.48 -0.5 27,598 - +0.5 27,600 + -0.9 27,670 + Dshi_3820 0.17 -1.1 27,678 - Dshi_3820 0.18 -0.3 27,731 + Dshi_3820 0.25 -1.5 27,737 + Dshi_3820 0.25 -0.6 27,814 + Dshi_3820 0.35 -1.1 27,892 + Dshi_3820 0.46 +0.3 27,955 - Dshi_3820 0.54 -0.2 27,966 - Dshi_3820 0.55 -0.6 28,055 - Dshi_3820 0.67 +0.1 28,163 + Dshi_3820 0.81 -0.2 28,213 - Dshi_3820 0.87 -1.8 28,318 - -0.4 28,501 - Dshi_3821 0.41 -0.3 28,513 + Dshi_3821 0.44 -1.5
Or see this region's nucleotide sequence