Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3694

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3692 and Dshi_3693 are separated by 1 nucleotidesDshi_3693 and Dshi_3694 are separated by 121 nucleotidesDshi_3694 and Dshi_3695 are separated by 157 nucleotides Dshi_3692: Dshi_3692 - hypothetical protein (RefSeq), at 94,825 to 95,286 _3692 Dshi_3693: Dshi_3693 - hypothetical protein (RefSeq), at 95,288 to 95,674 _3693 Dshi_3694: Dshi_3694 - hypothetical protein (RefSeq), at 95,796 to 97,667 _3694 Dshi_3695: Dshi_3695 - type III restriction protein res subunit (RefSeq), at 97,825 to 100,266 _3695 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -2 -1 0 1at 94.849 kb on - strandat 94.902 kb on + strand, within Dshi_3692at 94.927 kb on - strand, within Dshi_3692at 94.928 kb on - strand, within Dshi_3692at 94.988 kb on + strand, within Dshi_3692at 94.988 kb on + strand, within Dshi_3692at 94.988 kb on + strand, within Dshi_3692at 94.996 kb on - strand, within Dshi_3692at 94.996 kb on - strand, within Dshi_3692at 95.025 kb on - strand, within Dshi_3692at 95.047 kb on + strand, within Dshi_3692at 95.055 kb on - strand, within Dshi_3692at 95.080 kb on - strand, within Dshi_3692at 95.088 kb on - strand, within Dshi_3692at 95.103 kb on + strand, within Dshi_3692at 95.103 kb on + strand, within Dshi_3692at 95.104 kb on + strand, within Dshi_3692at 95.107 kb on - strand, within Dshi_3692at 95.112 kb on - strand, within Dshi_3692at 95.126 kb on + strand, within Dshi_3692at 95.137 kb on + strand, within Dshi_3692at 95.203 kb on - strand, within Dshi_3692at 95.206 kb on + strand, within Dshi_3692at 95.214 kb on - strand, within Dshi_3692at 95.217 kb on + strand, within Dshi_3692at 95.220 kb on + strand, within Dshi_3692at 95.265 kb on - strandat 95.299 kb on + strandat 95.299 kb on + strandat 95.299 kb on + strandat 95.299 kb on + strandat 95.302 kb on - strandat 95.307 kb on - strandat 95.307 kb on - strandat 95.307 kb on - strandat 95.307 kb on - strandat 95.307 kb on - strandat 95.307 kb on - strandat 95.343 kb on + strand, within Dshi_3693at 95.344 kb on + strand, within Dshi_3693at 95.361 kb on + strand, within Dshi_3693at 95.375 kb on - strand, within Dshi_3693at 95.503 kb on - strand, within Dshi_3693at 95.505 kb on - strand, within Dshi_3693at 95.602 kb on + strand, within Dshi_3693at 95.610 kb on - strand, within Dshi_3693at 95.669 kb on + strandat 95.677 kb on - strandat 95.689 kb on - strandat 95.689 kb on - strandat 95.714 kb on + strandat 95.719 kb on + strandat 95.739 kb on + strandat 95.744 kb on + strandat 95.792 kb on + strandat 95.847 kb on - strandat 95.910 kb on + strandat 95.933 kb on + strandat 95.955 kb on - strandat 95.990 kb on - strand, within Dshi_3694at 96.147 kb on + strand, within Dshi_3694at 96.169 kb on + strand, within Dshi_3694at 96.177 kb on - strand, within Dshi_3694at 96.191 kb on + strand, within Dshi_3694at 96.199 kb on - strand, within Dshi_3694at 96.256 kb on - strand, within Dshi_3694at 96.331 kb on + strand, within Dshi_3694at 96.345 kb on - strand, within Dshi_3694at 96.353 kb on + strand, within Dshi_3694at 96.415 kb on + strand, within Dshi_3694at 96.420 kb on + strand, within Dshi_3694at 96.423 kb on - strand, within Dshi_3694at 96.449 kb on - strand, within Dshi_3694at 96.550 kb on + strand, within Dshi_3694at 96.550 kb on - strand, within Dshi_3694at 96.583 kb on - strand, within Dshi_3694at 96.585 kb on + strand, within Dshi_3694at 96.586 kb on + strand, within Dshi_3694at 96.593 kb on - strand, within Dshi_3694at 96.594 kb on - strand, within Dshi_3694at 96.594 kb on - strand, within Dshi_3694at 96.604 kb on - strand, within Dshi_3694at 96.606 kb on + strand, within Dshi_3694at 96.619 kb on - strand, within Dshi_3694at 96.641 kb on + strand, within Dshi_3694at 96.673 kb on + strand, within Dshi_3694at 96.772 kb on + strand, within Dshi_3694at 96.783 kb on + strand, within Dshi_3694at 96.812 kb on + strand, within Dshi_3694at 96.826 kb on - strand, within Dshi_3694at 96.862 kb on - strand, within Dshi_3694at 96.968 kb on + strand, within Dshi_3694at 96.970 kb on + strand, within Dshi_3694at 96.970 kb on + strand, within Dshi_3694at 96.970 kb on + strand, within Dshi_3694at 96.992 kb on + strand, within Dshi_3694at 97.048 kb on + strand, within Dshi_3694at 97.055 kb on + strand, within Dshi_3694at 97.056 kb on - strand, within Dshi_3694at 97.056 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.082 kb on - strand, within Dshi_3694at 97.198 kb on - strand, within Dshi_3694at 97.260 kb on + strand, within Dshi_3694at 97.310 kb on - strand, within Dshi_3694at 97.328 kb on - strand, within Dshi_3694at 97.374 kb on + strand, within Dshi_3694at 97.384 kb on + strand, within Dshi_3694at 97.417 kb on - strand, within Dshi_3694at 97.417 kb on - strand, within Dshi_3694at 97.448 kb on + strand, within Dshi_3694at 97.456 kb on - strand, within Dshi_3694at 97.530 kb on - strandat 97.533 kb on + strandat 97.541 kb on - strandat 97.554 kb on + strandat 97.559 kb on + strandat 97.562 kb on - strandat 97.562 kb on - strandat 97.567 kb on - strandat 97.567 kb on - strandat 97.575 kb on - strandat 97.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
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94,849 - +0.2
94,902 + Dshi_3692 0.17 -0.5
94,927 - Dshi_3692 0.22 -0.2
94,928 - Dshi_3692 0.22 +0.7
94,988 + Dshi_3692 0.35 +0.4
94,988 + Dshi_3692 0.35 +0.1
94,988 + Dshi_3692 0.35 -0.4
94,996 - Dshi_3692 0.37 +1.7
94,996 - Dshi_3692 0.37 -0.6
95,025 - Dshi_3692 0.43 -0.5
95,047 + Dshi_3692 0.48 -0.8
95,055 - Dshi_3692 0.50 -2.0
95,080 - Dshi_3692 0.55 +0.1
95,088 - Dshi_3692 0.57 -0.4
95,103 + Dshi_3692 0.60 -0.4
95,103 + Dshi_3692 0.60 -0.1
95,104 + Dshi_3692 0.60 -0.2
95,107 - Dshi_3692 0.61 -0.0
95,112 - Dshi_3692 0.62 -0.2
95,126 + Dshi_3692 0.65 +0.1
95,137 + Dshi_3692 0.68 -0.9
95,203 - Dshi_3692 0.82 +0.0
95,206 + Dshi_3692 0.82 -0.2
95,214 - Dshi_3692 0.84 +0.3
95,217 + Dshi_3692 0.85 -0.1
95,220 + Dshi_3692 0.85 +0.1
95,265 - +0.7
95,299 + +1.3
95,299 + +0.1
95,299 + +1.3
95,299 + -0.1
95,302 - -0.3
95,307 - +0.8
95,307 - -0.2
95,307 - -0.6
95,307 - -0.8
95,307 - -1.5
95,307 - -0.7
95,343 + Dshi_3693 0.14 +0.4
95,344 + Dshi_3693 0.14 -0.1
95,361 + Dshi_3693 0.19 -0.2
95,375 - Dshi_3693 0.22 -0.1
95,503 - Dshi_3693 0.56 +0.0
95,505 - Dshi_3693 0.56 -0.6
95,602 + Dshi_3693 0.81 +0.0
95,610 - Dshi_3693 0.83 -0.0
95,669 + -0.2
95,677 - -0.1
95,689 - +0.8
95,689 - -1.2
95,714 + -0.8
95,719 + +1.0
95,739 + -0.2
95,744 + -0.1
95,792 + -0.2
95,847 - -0.2
95,910 + -0.1
95,933 + +0.2
95,955 - -0.2
95,990 - Dshi_3694 0.10 -0.4
96,147 + Dshi_3694 0.19 -0.2
96,169 + Dshi_3694 0.20 -1.0
96,177 - Dshi_3694 0.20 +0.6
96,191 + Dshi_3694 0.21 +0.1
96,199 - Dshi_3694 0.22 -0.1
96,256 - Dshi_3694 0.25 -0.1
96,331 + Dshi_3694 0.29 -1.4
96,345 - Dshi_3694 0.29 -1.4
96,353 + Dshi_3694 0.30 +1.3
96,415 + Dshi_3694 0.33 -0.2
96,420 + Dshi_3694 0.33 +0.2
96,423 - Dshi_3694 0.33 -0.4
96,449 - Dshi_3694 0.35 -0.5
96,550 + Dshi_3694 0.40 -0.1
96,550 - Dshi_3694 0.40 +0.2
96,583 - Dshi_3694 0.42 -0.2
96,585 + Dshi_3694 0.42 -1.5
96,586 + Dshi_3694 0.42 -0.8
96,593 - Dshi_3694 0.43 +0.5
96,594 - Dshi_3694 0.43 -0.1
96,594 - Dshi_3694 0.43 -0.3
96,604 - Dshi_3694 0.43 -0.1
96,606 + Dshi_3694 0.43 -0.3
96,619 - Dshi_3694 0.44 -0.2
96,641 + Dshi_3694 0.45 -0.4
96,673 + Dshi_3694 0.47 -0.7
96,772 + Dshi_3694 0.52 -0.4
96,783 + Dshi_3694 0.53 +0.3
96,812 + Dshi_3694 0.54 -0.2
96,826 - Dshi_3694 0.55 +0.0
96,862 - Dshi_3694 0.57 +1.1
96,968 + Dshi_3694 0.63 -1.0
96,970 + Dshi_3694 0.63 -0.6
96,970 + Dshi_3694 0.63 +0.1
96,970 + Dshi_3694 0.63 -0.2
96,992 + Dshi_3694 0.64 -0.2
97,048 + Dshi_3694 0.67 -0.2
97,055 + Dshi_3694 0.67 +0.8
97,056 - Dshi_3694 0.67 -0.3
97,056 - Dshi_3694 0.67 +0.1
97,082 - Dshi_3694 0.69 +0.2
97,082 - Dshi_3694 0.69 -0.4
97,082 - Dshi_3694 0.69 -1.4
97,082 - Dshi_3694 0.69 -0.2
97,198 - Dshi_3694 0.75 -0.9
97,260 + Dshi_3694 0.78 -0.1
97,310 - Dshi_3694 0.81 +0.1
97,328 - Dshi_3694 0.82 -0.2
97,374 + Dshi_3694 0.84 -1.1
97,384 + Dshi_3694 0.85 -0.5
97,417 - Dshi_3694 0.87 +0.4
97,417 - Dshi_3694 0.87 +0.0
97,448 + Dshi_3694 0.88 -0.0
97,456 - Dshi_3694 0.89 -0.3
97,530 - +0.1
97,533 + -0.6
97,541 - +0.4
97,554 + -0.4
97,559 + -0.7
97,562 - -1.3
97,562 - -0.4
97,567 - -0.1
97,567 - -0.1
97,575 - -0.6
97,602 - -0.5

Or see this region's nucleotide sequence