Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3067
Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. 1-ethyl-3-methylimidazolium acetate 2 mM |
---|---|---|---|---|---|
remove | |||||
3,234,869 | + | Dshi_3066 | 0.31 | +1.3 | |
3,234,877 | - | Dshi_3066 | 0.32 | +0.5 | |
3,234,890 | + | Dshi_3066 | 0.33 | +1.2 | |
3,234,966 | + | Dshi_3066 | 0.39 | +1.2 | |
3,234,979 | - | Dshi_3066 | 0.40 | +0.2 | |
3,235,156 | - | Dshi_3066 | 0.56 | +1.2 | |
3,235,407 | - | Dshi_3066 | 0.77 | +0.9 | |
3,235,460 | + | Dshi_3066 | 0.81 | +0.7 | |
3,235,460 | + | Dshi_3066 | 0.81 | +2.0 | |
3,235,473 | - | Dshi_3066 | 0.82 | +1.0 | |
3,235,489 | + | Dshi_3066 | 0.84 | +1.0 | |
3,235,855 | + | Dshi_3067 | 0.11 | +1.9 | |
3,235,863 | - | Dshi_3067 | 0.12 | -0.8 | |
3,235,930 | - | Dshi_3067 | 0.21 | +0.6 | |
3,236,036 | - | Dshi_3067 | 0.36 | +1.3 | |
3,236,065 | - | Dshi_3067 | 0.40 | +1.5 | |
3,236,134 | - | Dshi_3067 | 0.49 | +1.6 | |
3,236,238 | + | Dshi_3067 | 0.63 | +0.3 | |
3,236,526 | - | -0.0 | |||
3,236,645 | + | -0.3 | |||
3,237,023 | + | Dshi_3068 | 0.23 | +0.2 | |
3,237,132 | + | Dshi_3068 | 0.35 | +0.8 | |
3,237,140 | - | Dshi_3068 | 0.35 | -0.3 | |
3,237,201 | - | Dshi_3068 | 0.42 | +0.2 |
Or see this region's nucleotide sequence