Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1696

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
1,763,937	+				+0.9
1,764,019	+				-0.6
1,765,044	+				+0.4
1,765,044	+				-0.4
1,765,333	+		Dshi_1696	0.27	-2.0
1,765,390	+		Dshi_1696	0.30	-0.3
1,765,427	-		Dshi_1696	0.33	-0.0
1,765,483	+		Dshi_1696	0.36	-0.6
1,765,846	-		Dshi_1696	0.58	-1.6
1,766,050	-		Dshi_1696	0.71	-0.7
1,766,058	-		Dshi_1696	0.71	-1.4
1,766,197	+		Dshi_1696	0.80	+0.3
1,766,293	-		Dshi_1696	0.86	-0.6
1,766,387	+				+0.5
1,766,421	-				-0.5
1,766,440	-				-0.0
1,766,454	-				-0.3
1,766,464	-				-0.7
1,766,471	+				-1.3
1,766,471	+				+0.2
1,766,471	+				+0.6
1,766,471	+				+0.7
1,766,471	+				-0.6
1,766,479	-				-0.4
1,766,479	-				-0.8
1,766,479	-				-0.2
1,766,479	-				-0.3
1,766,509	-				-1.1
1,766,518	-				-1.6
1,766,518	-				+0.3
1,766,518	-				-0.4
1,766,518	-				+2.0
1,766,518	-				-0.6
1,766,536	-				-0.6
1,766,537	+				+0.5
1,766,550	-				-0.5
1,766,560	-				+0.2
1,766,566	+				-0.5
1,766,574	-		Dshi_1697	0.11	+0.7
1,766,583	+		Dshi_1697	0.13	-0.2
1,766,620	+		Dshi_1697	0.22	-0.0
1,766,633	+		Dshi_1697	0.25	-0.0
1,766,641	-		Dshi_1697	0.27	-0.4
1,766,669	-		Dshi_1697	0.34	-1.3
1,766,696	+		Dshi_1697	0.40	+0.0
1,766,702	-		Dshi_1697	0.42	-1.2
1,766,702	-		Dshi_1697	0.42	+1.0
1,766,704	-		Dshi_1697	0.42	-0.8
1,766,704	-		Dshi_1697	0.42	-1.6
1,766,704	-		Dshi_1697	0.42	-0.2
1,766,704	-		Dshi_1697	0.42	+0.5
1,766,713	+		Dshi_1697	0.44	+0.4
1,766,720	+		Dshi_1697	0.46	-0.0
1,766,720	+		Dshi_1697	0.46	-0.3
1,766,720	+		Dshi_1697	0.46	+0.1
1,766,720	+		Dshi_1697	0.46	-0.3
1,766,720	+		Dshi_1697	0.46	-0.1
1,766,720	+		Dshi_1697	0.46	-0.4
1,766,720	+		Dshi_1697	0.46	-1.3
1,766,720	+		Dshi_1697	0.46	+0.2
1,766,720	+		Dshi_1697	0.46	-2.3
1,766,720	+		Dshi_1697	0.46	-1.8
1,766,720	+		Dshi_1697	0.46	-0.2
1,766,720	+		Dshi_1697	0.46	-0.1
1,766,720	+		Dshi_1697	0.46	-1.0
1,766,720	+		Dshi_1697	0.46	-0.6
1,766,720	+		Dshi_1697	0.46	-0.1
1,766,720	+		Dshi_1697	0.46	-2.0
1,766,720	+		Dshi_1697	0.46	-0.7
1,766,720	+		Dshi_1697	0.46	-1.0
1,766,720	+		Dshi_1697	0.46	-0.9
1,766,720	+		Dshi_1697	0.46	-0.1
1,766,720	+		Dshi_1697	0.46	-1.2
1,766,720	+		Dshi_1697	0.46	-0.1
1,766,720	+		Dshi_1697	0.46	-0.9
1,766,720	+		Dshi_1697	0.46	+0.3
1,766,720	+		Dshi_1697	0.46	-0.6
1,766,723	-		Dshi_1697	0.47	-0.5
1,766,725	+		Dshi_1697	0.47	-0.8
1,766,728	-		Dshi_1697	0.48	-1.6
1,766,728	-		Dshi_1697	0.48	-0.8
1,766,728	-		Dshi_1697	0.48	+0.1
1,766,728	-		Dshi_1697	0.48	-0.1
1,766,728	-		Dshi_1697	0.48	-0.7
1,766,728	-		Dshi_1697	0.48	-0.9
1,766,728	-		Dshi_1697	0.48	-1.5
1,766,728	-		Dshi_1697	0.48	-0.2
1,766,728	-		Dshi_1697	0.48	+1.2
1,766,728	-		Dshi_1697	0.48	-0.7
1,766,728	-		Dshi_1697	0.48	+0.4
1,766,728	-		Dshi_1697	0.48	+0.1
1,766,728	-		Dshi_1697	0.48	-1.3
1,766,728	-		Dshi_1697	0.48	+0.2
1,766,728	-		Dshi_1697	0.48	+0.5
1,766,728	-				-0.0
1,766,728	-		Dshi_1697	0.48	+0.4
1,766,728	-		Dshi_1697	0.48	-1.7
1,766,728	-		Dshi_1697	0.48	+0.6
1,766,728	-		Dshi_1697	0.48	-0.2
1,766,728	-		Dshi_1697	0.48	-0.1
1,766,728	-		Dshi_1697	0.48	-0.8
1,766,728	-		Dshi_1697	0.48	-0.0
1,766,728	-		Dshi_1697	0.48	+0.2
1,766,728	-		Dshi_1697	0.48	+0.3
1,766,728	-		Dshi_1697	0.48	-0.9
1,766,728	-		Dshi_1697	0.48	-1.0
1,766,728	-		Dshi_1697	0.48	-0.6
1,766,728	-		Dshi_1697	0.48	-1.0
1,766,728	-		Dshi_1697	0.48	+0.1
1,766,728	-		Dshi_1697	0.48	+0.8
1,766,728	-		Dshi_1697	0.48	+0.3
1,766,728	-		Dshi_1697	0.48	+0.8
1,766,733	-		Dshi_1697	0.49	-1.0
1,766,735	-		Dshi_1697	0.49	-0.0
1,766,769	+		Dshi_1697	0.57	-0.5
1,766,769	+		Dshi_1697	0.57	-2.0
1,766,770	-		Dshi_1697	0.58	-0.4
1,766,770	-		Dshi_1697	0.58	-0.0
1,766,776	+		Dshi_1697	0.59	-1.5
1,766,777	-		Dshi_1697	0.59	-1.3
1,766,777	-		Dshi_1697	0.59	-0.9
1,766,777	-		Dshi_1697	0.59	-0.0
1,766,814	-		Dshi_1697	0.68	+1.1
1,766,842	+		Dshi_1697	0.75	-0.3
1,766,892	-		Dshi_1697	0.87	+1.0
1,766,892	-		Dshi_1697	0.87	-1.0
1,766,892	-		Dshi_1697	0.87	-0.2
1,766,896	+		Dshi_1697	0.87	+0.7
1,766,897	-		Dshi_1697	0.88	-0.3
1,766,904	-		Dshi_1697	0.89	-0.6
1,766,924	-				+0.0
1,766,924	-				-0.6
1,766,949	+				-1.3
1,766,949	+				-2.6
1,766,957	-				-1.9
1,766,957	-				-0.2
1,766,966	+				+0.3
1,766,974	-				-2.1
1,766,979	-				-0.3
1,767,003	-				-0.3
1,767,003	-				-0.3
1,767,003	-				-0.0
1,767,022	-				-0.5
1,767,022	-				+1.0
1,767,087	+				-0.2
1,767,116	+				-0.2
1,767,116	+				+1.1
1,767,124	-				+0.3
1,767,124	-				-0.0
1,767,143	-				-1.2
1,767,143	-				-0.1
1,767,143	-				-0.6
1,767,143	-				-0.6
1,767,143	-				+0.1
1,767,166	-				-0.0