Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1285
Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. 1-ethyl-3-methylimidazolium acetate 2 mM |
---|---|---|---|---|---|
remove | |||||
1,336,877 | - | Dshi_1283 | 0.82 | +1.1 | |
1,336,941 | + | Dshi_1283 | 0.86 | -0.4 | |
1,336,942 | - | Dshi_1283 | 0.86 | -0.8 | |
1,336,966 | + | Dshi_1283 | 0.87 | -0.9 | |
1,337,088 | - | -0.2 | |||
1,338,518 | + | -1.4 | |||
1,338,584 | - | -0.6 | |||
1,338,693 | - | +0.1 | |||
1,338,742 | + | -0.5 | |||
1,338,790 | + | Dshi_1286 | 0.10 | -0.3 | |
1,338,800 | + | Dshi_1286 | 0.11 | -0.4 | |
1,338,803 | - | Dshi_1286 | 0.11 | -0.4 | |
1,338,808 | - | Dshi_1286 | 0.12 | -0.6 | |
1,338,992 | - | Dshi_1286 | 0.26 | -1.7 | |
1,339,067 | - | Dshi_1286 | 0.32 | -2.6 | |
1,339,079 | - | Dshi_1286 | 0.33 | -0.6 |
Or see this region's nucleotide sequence