Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1184

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1183 and Dshi_1184 are separated by 72 nucleotidesDshi_1184 and Dshi_1185 are separated by 166 nucleotides Dshi_1183: Dshi_1183 - hypothetical protein (RefSeq), at 1,218,363 to 1,219,592 _1183 Dshi_1184: Dshi_1184 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq), at 1,219,665 to 1,220,816 _1184 Dshi_1185: Dshi_1185 - dimethyladenosine transferase (RefSeq), at 1,220,983 to 1,221,825 _1185 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -1 0 1 2at 1219.275 kb on - strand, within Dshi_1183at 1219.558 kb on + strandat 1220.811 kb on + strandat 1221.109 kb on - strand, within Dshi_1185at 1221.155 kb on + strand, within Dshi_1185at 1221.168 kb on - strand, within Dshi_1185at 1221.281 kb on + strand, within Dshi_1185at 1221.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
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1,219,275 - Dshi_1183 0.74 -1.3
1,219,558 + -0.7
1,220,811 + -0.9
1,221,109 - Dshi_1185 0.15 +0.5
1,221,155 + Dshi_1185 0.20 +1.9
1,221,168 - Dshi_1185 0.22 +0.2
1,221,281 + Dshi_1185 0.35 +1.3
1,221,797 - +1.0

Or see this region's nucleotide sequence