Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0621

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0619 and Dshi_0620 overlap by 4 nucleotidesDshi_0620 and Dshi_0621 are separated by 159 nucleotidesDshi_0621 and Dshi_0622 are separated by 73 nucleotidesDshi_0622 and Dshi_0623 are separated by 345 nucleotides Dshi_0619: Dshi_0619 - hypothetical protein (RefSeq), at 612,549 to 612,863 _0619 Dshi_0620: Dshi_0620 - short-chain dehydrogenase/reductase SDR (RefSeq), at 612,860 to 613,612 _0620 Dshi_0621: Dshi_0621 - beta-Ig-H3/fasciclin (RefSeq), at 613,772 to 614,260 _0621 Dshi_0622: Dshi_0622 - beta-Ig-H3/fasciclin (RefSeq), at 614,334 to 614,825 _0622 Dshi_0623: Dshi_0623 - oxidoreductase molybdopterin binding (RefSeq), at 615,171 to 616,088 _0623 Position (kb) 613 614 615Strain fitness (log2 ratio) -2 -1 0 1 2at 612.811 kb on + strand, within Dshi_0619at 612.819 kb on - strand, within Dshi_0619at 612.848 kb on - strandat 612.915 kb on + strandat 613.009 kb on - strand, within Dshi_0620at 613.053 kb on + strand, within Dshi_0620at 613.078 kb on + strand, within Dshi_0620at 613.088 kb on + strand, within Dshi_0620at 613.120 kb on + strand, within Dshi_0620at 613.128 kb on + strand, within Dshi_0620at 613.130 kb on - strand, within Dshi_0620at 613.169 kb on + strand, within Dshi_0620at 613.186 kb on + strand, within Dshi_0620at 613.188 kb on + strand, within Dshi_0620at 613.188 kb on + strand, within Dshi_0620at 613.226 kb on - strand, within Dshi_0620at 613.249 kb on + strand, within Dshi_0620at 613.343 kb on + strand, within Dshi_0620at 613.356 kb on + strand, within Dshi_0620at 613.435 kb on + strand, within Dshi_0620at 613.468 kb on + strand, within Dshi_0620at 613.468 kb on + strand, within Dshi_0620at 613.476 kb on - strand, within Dshi_0620at 613.478 kb on + strand, within Dshi_0620at 613.591 kb on + strandat 613.709 kb on - strandat 613.710 kb on + strandat 613.715 kb on + strandat 613.723 kb on - strandat 613.819 kb on - strandat 613.887 kb on + strand, within Dshi_0621at 613.887 kb on - strand, within Dshi_0621at 613.924 kb on - strand, within Dshi_0621at 613.931 kb on - strand, within Dshi_0621at 613.941 kb on - strand, within Dshi_0621at 613.967 kb on + strand, within Dshi_0621at 614.001 kb on + strand, within Dshi_0621at 614.012 kb on + strand, within Dshi_0621at 614.012 kb on + strand, within Dshi_0621at 614.208 kb on + strand, within Dshi_0621at 614.218 kb on + strandat 614.311 kb on - strandat 614.317 kb on + strandat 614.356 kb on - strandat 614.408 kb on - strand, within Dshi_0622at 614.423 kb on + strand, within Dshi_0622at 614.448 kb on - strand, within Dshi_0622at 614.532 kb on + strand, within Dshi_0622at 614.555 kb on - strand, within Dshi_0622at 614.631 kb on - strand, within Dshi_0622at 614.739 kb on - strand, within Dshi_0622at 614.750 kb on + strand, within Dshi_0622at 614.768 kb on - strand, within Dshi_0622at 614.779 kb on - strandat 614.792 kb on - strandat 614.864 kb on + strandat 614.886 kb on + strandat 614.894 kb on - strandat 614.894 kb on - strandat 614.922 kb on - strandat 614.964 kb on - strandat 614.973 kb on + strandat 614.983 kb on - strandat 614.990 kb on - strandat 615.032 kb on + strandat 615.074 kb on - strandat 615.074 kb on - strandat 615.110 kb on + strandat 615.116 kb on + strandat 615.124 kb on - strandat 615.147 kb on - strandat 615.181 kb on + strandat 615.198 kb on + strandat 615.198 kb on + strandat 615.198 kb on + strandat 615.199 kb on - strandat 615.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
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612,811 + Dshi_0619 0.83 -0.8
612,819 - Dshi_0619 0.86 -1.1
612,848 - -0.5
612,915 + +0.2
613,009 - Dshi_0620 0.20 +0.3
613,053 + Dshi_0620 0.26 -0.3
613,078 + Dshi_0620 0.29 +0.5
613,088 + Dshi_0620 0.30 +0.1
613,120 + Dshi_0620 0.35 -0.1
613,128 + Dshi_0620 0.36 +0.2
613,130 - Dshi_0620 0.36 +0.0
613,169 + Dshi_0620 0.41 +2.2
613,186 + Dshi_0620 0.43 +1.1
613,188 + Dshi_0620 0.44 +0.6
613,188 + Dshi_0620 0.44 -1.3
613,226 - Dshi_0620 0.49 -0.5
613,249 + Dshi_0620 0.52 +0.2
613,343 + Dshi_0620 0.64 +0.1
613,356 + Dshi_0620 0.66 +0.5
613,435 + Dshi_0620 0.76 +0.9
613,468 + Dshi_0620 0.81 +0.7
613,468 + Dshi_0620 0.81 -2.2
613,476 - Dshi_0620 0.82 +0.0
613,478 + Dshi_0620 0.82 -0.3
613,591 + -0.1
613,709 - -0.9
613,710 + -0.3
613,715 + -0.2
613,723 - +1.0
613,819 - +0.7
613,887 + Dshi_0621 0.24 -0.5
613,887 - Dshi_0621 0.24 -1.8
613,924 - Dshi_0621 0.31 -0.4
613,931 - Dshi_0621 0.33 +0.1
613,941 - Dshi_0621 0.35 +0.5
613,967 + Dshi_0621 0.40 -0.9
614,001 + Dshi_0621 0.47 -0.3
614,012 + Dshi_0621 0.49 -0.1
614,012 + Dshi_0621 0.49 -0.1
614,208 + Dshi_0621 0.89 -0.2
614,218 + +1.1
614,311 - -0.4
614,317 + +1.5
614,356 - +0.5
614,408 - Dshi_0622 0.15 -0.0
614,423 + Dshi_0622 0.18 -0.2
614,448 - Dshi_0622 0.23 -0.3
614,532 + Dshi_0622 0.40 -1.9
614,555 - Dshi_0622 0.45 +0.1
614,631 - Dshi_0622 0.60 -0.9
614,739 - Dshi_0622 0.82 +0.2
614,750 + Dshi_0622 0.85 +0.2
614,768 - Dshi_0622 0.88 +0.2
614,779 - -0.7
614,792 - -0.2
614,864 + -0.6
614,886 + +0.0
614,894 - -0.5
614,894 - +0.2
614,922 - -0.0
614,964 - -0.4
614,973 + -0.4
614,983 - +0.0
614,990 - -2.1
615,032 + -0.0
615,074 - -0.6
615,074 - -0.3
615,110 + -0.1
615,116 + +0.0
615,124 - +0.1
615,147 - -0.1
615,181 + +0.1
615,198 + -0.5
615,198 + -0.6
615,198 + -0.5
615,199 - -1.0
615,206 - -0.7

Or see this region's nucleotide sequence