Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0326 and Dshi_0327 overlap by 4 nucleotides Dshi_0327 and Dshi_0328 overlap by 4 nucleotides Dshi_0328 and Dshi_0329 are separated by 121 nucleotides
Dshi_0326: Dshi_0326 - GTP-binding protein HSR1-related (RefSeq), at 313,718 to 314,371
_0326
Dshi_0327: Dshi_0327 - MOSC domain containing protein (RefSeq), at 314,368 to 315,117
_0327
Dshi_0328: Dshi_0328 - 60 kDa inner membrane insertion protein (RefSeq), at 315,114 to 316,934
_0328
Dshi_0329: Dshi_0329 - diguanylate cyclase/phosphodiesterase (RefSeq), at 317,056 to 318,645
_0329
Position (kb) 315
316
317 Strain fitness (log2 ratio) -1
0
1 at 317.063 kb on + strand at 317.242 kb on + strand, within Dshi_0329 at 317.300 kb on + strand at 317.333 kb on + strand, within Dshi_0329 at 317.517 kb on + strand, within Dshi_0329 at 317.556 kb on + strand, within Dshi_0329 at 317.564 kb on - strand, within Dshi_0329 at 317.564 kb on - strand, within Dshi_0329 at 317.745 kb on - strand, within Dshi_0329 at 317.746 kb on + strand, within Dshi_0329 at 317.749 kb on - strand, within Dshi_0329 at 317.771 kb on + strand, within Dshi_0329 at 317.779 kb on - strand, within Dshi_0329 at 317.841 kb on - strand, within Dshi_0329 at 317.848 kb on - strand, within Dshi_0329 at 317.853 kb on - strand, within Dshi_0329 at 317.870 kb on - strand, within Dshi_0329
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM remove 317,063 + -0.1 317,242 + Dshi_0329 0.12 -0.5 317,300 + +0.7 317,333 + Dshi_0329 0.17 -0.2 317,517 + Dshi_0329 0.29 +0.4 317,556 + Dshi_0329 0.31 +0.2 317,564 - Dshi_0329 0.32 +0.1 317,564 - Dshi_0329 0.32 -0.1 317,745 - Dshi_0329 0.43 -0.0 317,746 + Dshi_0329 0.43 -0.5 317,749 - Dshi_0329 0.44 +0.7 317,771 + Dshi_0329 0.45 -1.4 317,779 - Dshi_0329 0.45 +0.2 317,841 - Dshi_0329 0.49 +0.1 317,848 - Dshi_0329 0.50 -0.1 317,853 - Dshi_0329 0.50 -0.1 317,870 - Dshi_0329 0.51 -0.0
Or see this region's nucleotide sequence