Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0204 and Dshi_0205 are separated by 275 nucleotides Dshi_0205 and Dshi_0206 overlap by 8 nucleotides Dshi_0206 and Dshi_0207 are separated by 80 nucleotides
Dshi_0204: Dshi_0204 - acyl-CoA dehydrogenase domain protein (RefSeq), at 201,901 to 203,595
_0204
Dshi_0205: Dshi_0205 - protein of unknown function DUF81 (RefSeq), at 203,871 to 204,635
_0205
Dshi_0206: Dshi_0206 - hypothetical protein (RefSeq), at 204,628 to 205,515
_0206
Dshi_0207: Dshi_0207 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 205,596 to 205,865
_0207
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1 at 202.871 kb on + strand, within Dshi_0204 at 202.871 kb on + strand, within Dshi_0204 at 202.879 kb on - strand, within Dshi_0204 at 202.896 kb on + strand, within Dshi_0204 at 203.144 kb on + strand, within Dshi_0204 at 203.260 kb on - strand, within Dshi_0204 at 203.735 kb on - strand at 203.991 kb on - strand, within Dshi_0205 at 204.028 kb on + strand, within Dshi_0205 at 204.160 kb on + strand, within Dshi_0205 at 204.383 kb on + strand, within Dshi_0205 at 204.480 kb on - strand, within Dshi_0205 at 204.603 kb on + strand at 204.754 kb on + strand, within Dshi_0206 at 204.762 kb on - strand, within Dshi_0206 at 204.882 kb on + strand, within Dshi_0206 at 204.999 kb on + strand, within Dshi_0206 at 205.048 kb on + strand, within Dshi_0206 at 205.099 kb on - strand, within Dshi_0206 at 205.141 kb on + strand, within Dshi_0206 at 205.296 kb on - strand, within Dshi_0206 at 205.348 kb on - strand, within Dshi_0206 at 205.353 kb on - strand, within Dshi_0206 at 205.370 kb on + strand, within Dshi_0206 at 205.430 kb on - strand at 205.457 kb on + strand at 205.483 kb on - strand at 205.552 kb on + strand at 205.555 kb on - strand at 205.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM remove 202,871 + Dshi_0204 0.57 +0.1 202,871 + Dshi_0204 0.57 +1.4 202,879 - Dshi_0204 0.58 +1.0 202,896 + Dshi_0204 0.59 +0.2 203,144 + Dshi_0204 0.73 +0.7 203,260 - Dshi_0204 0.80 +0.1 203,735 - -0.1 203,991 - Dshi_0205 0.16 +1.2 204,028 + Dshi_0205 0.21 +0.1 204,160 + Dshi_0205 0.38 +0.2 204,383 + Dshi_0205 0.67 +0.3 204,480 - Dshi_0205 0.80 -1.1 204,603 + +0.1 204,754 + Dshi_0206 0.14 +1.0 204,762 - Dshi_0206 0.15 +0.8 204,882 + Dshi_0206 0.29 -1.0 204,999 + Dshi_0206 0.42 +1.1 205,048 + Dshi_0206 0.47 +0.2 205,099 - Dshi_0206 0.53 -0.4 205,141 + Dshi_0206 0.58 +0.4 205,296 - Dshi_0206 0.75 +0.9 205,348 - Dshi_0206 0.81 +0.8 205,353 - Dshi_0206 0.82 +0.8 205,370 + Dshi_0206 0.84 +0.7 205,430 - -0.9 205,457 + +0.7 205,483 - +0.7 205,552 + +0.3 205,555 - +0.5 205,589 - -0.5
Or see this region's nucleotide sequence