Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0202 and Dshi_0203 are separated by 68 nucleotides Dshi_0203 and Dshi_0204 are separated by 61 nucleotides Dshi_0204 and Dshi_0205 are separated by 275 nucleotides
Dshi_0202: Dshi_0202 - protein of unknown function DUF1491 (RefSeq), at 200,713 to 201,045
_0202
Dshi_0203: Dshi_0203 - DNA repair protein RecO (RefSeq), at 201,114 to 201,839
_0203
Dshi_0204: Dshi_0204 - acyl-CoA dehydrogenase domain protein (RefSeq), at 201,901 to 203,595
_0204
Dshi_0205: Dshi_0205 - protein of unknown function DUF81 (RefSeq), at 203,871 to 204,635
_0205
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -1
0
1 at 200.992 kb on + strand, within Dshi_0202 at 201.059 kb on - strand at 201.132 kb on - strand at 201.194 kb on - strand, within Dshi_0203 at 201.715 kb on + strand, within Dshi_0203 at 201.875 kb on + strand at 202.055 kb on + strand at 202.055 kb on + strand at 202.123 kb on - strand, within Dshi_0204 at 202.301 kb on - strand, within Dshi_0204 at 202.312 kb on - strand, within Dshi_0204 at 202.382 kb on + strand, within Dshi_0204 at 202.467 kb on - strand, within Dshi_0204 at 202.527 kb on + strand, within Dshi_0204 at 202.550 kb on + strand, within Dshi_0204 at 202.577 kb on - strand, within Dshi_0204 at 202.590 kb on - strand, within Dshi_0204 at 202.642 kb on + strand, within Dshi_0204 at 202.657 kb on + strand, within Dshi_0204 at 202.685 kb on + strand, within Dshi_0204 at 202.871 kb on + strand, within Dshi_0204 at 202.871 kb on + strand, within Dshi_0204 at 202.879 kb on - strand, within Dshi_0204 at 202.896 kb on + strand, within Dshi_0204 at 203.144 kb on + strand, within Dshi_0204 at 203.260 kb on - strand, within Dshi_0204 at 203.735 kb on - strand at 203.991 kb on - strand, within Dshi_0205 at 204.028 kb on + strand, within Dshi_0205 at 204.160 kb on + strand, within Dshi_0205 at 204.383 kb on + strand, within Dshi_0205 at 204.480 kb on - strand, within Dshi_0205
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM remove 200,992 + Dshi_0202 0.84 +0.3 201,059 - +0.2 201,132 - -0.6 201,194 - Dshi_0203 0.11 +0.5 201,715 + Dshi_0203 0.83 +0.1 201,875 + +0.5 202,055 + +1.0 202,055 + +0.5 202,123 - Dshi_0204 0.13 +0.2 202,301 - Dshi_0204 0.24 +0.7 202,312 - Dshi_0204 0.24 +0.8 202,382 + Dshi_0204 0.28 +1.2 202,467 - Dshi_0204 0.33 +0.5 202,527 + Dshi_0204 0.37 +0.8 202,550 + Dshi_0204 0.38 +1.0 202,577 - Dshi_0204 0.40 -0.8 202,590 - Dshi_0204 0.41 +0.7 202,642 + Dshi_0204 0.44 +0.8 202,657 + Dshi_0204 0.45 +0.7 202,685 + Dshi_0204 0.46 +0.4 202,871 + Dshi_0204 0.57 +0.1 202,871 + Dshi_0204 0.57 +1.4 202,879 - Dshi_0204 0.58 +1.0 202,896 + Dshi_0204 0.59 +0.2 203,144 + Dshi_0204 0.73 +0.7 203,260 - Dshi_0204 0.80 +0.1 203,735 - -0.1 203,991 - Dshi_0205 0.16 +1.2 204,028 + Dshi_0205 0.21 +0.1 204,160 + Dshi_0205 0.38 +0.2 204,383 + Dshi_0205 0.67 +0.3 204,480 - Dshi_0205 0.80 -1.1
Or see this region's nucleotide sequence