Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_5001

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0820 and Dshi_5001 are separated by 81 nucleotidesDshi_5001 and Dshi_0821 are separated by 13 nucleotides Dshi_0820: Dshi_0820 - alpha/beta hydrolase fold (RefSeq), at 824,267 to 825,034 _0820 Dshi_5001: Dshi_5001 - hypothtical protein (RefSeq), at 825,116 to 825,505 _5001 Dshi_0821: Dshi_0821 - Glycine hydroxymethyltransferase (RefSeq), at 825,519 to 826,814 _0821 Position (kb) 825 826Strain fitness (log2 ratio) -2 -1 0 1 2at 824.167 kb on + strandat 824.319 kb on + strandat 824.451 kb on - strand, within Dshi_0820at 824.451 kb on - strand, within Dshi_0820at 824.686 kb on + strand, within Dshi_0820at 824.794 kb on - strand, within Dshi_0820at 824.876 kb on - strand, within Dshi_0820at 824.917 kb on + strand, within Dshi_0820at 824.969 kb on - strandat 825.020 kb on - strandat 825.064 kb on - strandat 825.121 kb on - strandat 825.125 kb on - strandat 825.298 kb on - strand, within Dshi_5001at 825.309 kb on + strand, within Dshi_5001at 825.379 kb on + strand, within Dshi_5001at 825.494 kb on + strandat 825.525 kb on - strandat 825.528 kb on + strandat 825.692 kb on + strand, within Dshi_0821at 825.713 kb on + strand, within Dshi_0821at 825.799 kb on - strand, within Dshi_0821at 825.842 kb on + strand, within Dshi_0821at 825.850 kb on - strand, within Dshi_0821at 826.342 kb on - strand, within Dshi_0821at 826.435 kb on - strand, within Dshi_0821

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 2 mM
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824,167 + +0.3
824,319 + -0.3
824,451 - Dshi_0820 0.24 +0.9
824,451 - Dshi_0820 0.24 -0.5
824,686 + Dshi_0820 0.55 -1.4
824,794 - Dshi_0820 0.69 -0.6
824,876 - Dshi_0820 0.79 +0.2
824,917 + Dshi_0820 0.85 -0.5
824,969 - -0.8
825,020 - -0.2
825,064 - -0.5
825,121 - -1.9
825,125 - -0.2
825,298 - Dshi_5001 0.47 +0.9
825,309 + Dshi_5001 0.49 -0.5
825,379 + Dshi_5001 0.67 +1.6
825,494 + -0.2
825,525 - -0.4
825,528 + -0.1
825,692 + Dshi_0821 0.13 -0.8
825,713 + Dshi_0821 0.15 +0.1
825,799 - Dshi_0821 0.22 +1.8
825,842 + Dshi_0821 0.25 -1.4
825,850 - Dshi_0821 0.26 -1.8
826,342 - Dshi_0821 0.64 +0.7
826,435 - Dshi_0821 0.71 +0.6

Or see this region's nucleotide sequence