Experiment: Phenylacetic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06547 and H281DRAFT_06548 overlap by 4 nucleotides H281DRAFT_06548 and H281DRAFT_06549 are separated by 24 nucleotides H281DRAFT_06549 and H281DRAFT_06550 are separated by 202 nucleotides
H281DRAFT_06547: H281DRAFT_06547 - RNA polymerase sigma-70 factor, ECF subfamily, at 32,981 to 33,499
_06547
H281DRAFT_06548: H281DRAFT_06548 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 33,496 to 34,323
_06548
H281DRAFT_06549: H281DRAFT_06549 - transcriptional regulator, AraC family, at 34,348 to 35,229
_06549
H281DRAFT_06550: H281DRAFT_06550 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 35,432 to 36,328
_06550
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1 at 33.368 kb on + strand at 34.337 kb on + strand at 34.338 kb on - strand at 34.338 kb on - strand at 34.416 kb on + strand at 34.520 kb on + strand, within H281DRAFT_06549 at 34.521 kb on - strand, within H281DRAFT_06549 at 34.521 kb on - strand, within H281DRAFT_06549 at 34.734 kb on + strand, within H281DRAFT_06549 at 35.158 kb on - strand at 35.295 kb on + strand at 35.395 kb on + strand at 35.396 kb on - strand at 35.524 kb on + strand, within H281DRAFT_06550 at 35.804 kb on + strand, within H281DRAFT_06550 at 35.805 kb on - strand, within H281DRAFT_06550 at 35.953 kb on + strand, within H281DRAFT_06550 at 35.954 kb on - strand, within H281DRAFT_06550 at 36.042 kb on + strand, within H281DRAFT_06550 at 36.042 kb on + strand, within H281DRAFT_06550 at 36.043 kb on - strand, within H281DRAFT_06550 at 36.203 kb on + strand, within H281DRAFT_06550 at 36.203 kb on + strand, within H281DRAFT_06550 at 36.204 kb on - strand, within H281DRAFT_06550
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic (C) remove 33,368 + -1.3 34,337 + +0.5 34,338 - -0.3 34,338 - -0.1 34,416 + -0.5 34,520 + H281DRAFT_06549 0.20 +1.4 34,521 - H281DRAFT_06549 0.20 +0.7 34,521 - H281DRAFT_06549 0.20 +1.4 34,734 + H281DRAFT_06549 0.44 -0.3 35,158 - +0.2 35,295 + -0.2 35,395 + -0.0 35,396 - +0.2 35,524 + H281DRAFT_06550 0.10 +0.3 35,804 + H281DRAFT_06550 0.41 +0.1 35,805 - H281DRAFT_06550 0.42 -1.2 35,953 + H281DRAFT_06550 0.58 +0.1 35,954 - H281DRAFT_06550 0.58 +0.3 36,042 + H281DRAFT_06550 0.68 -0.6 36,042 + H281DRAFT_06550 0.68 +0.4 36,043 - H281DRAFT_06550 0.68 +0.3 36,203 + H281DRAFT_06550 0.86 +0.2 36,203 + H281DRAFT_06550 0.86 +1.5 36,204 - H281DRAFT_06550 0.86 +0.6
Or see this region's nucleotide sequence