Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06090

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06088 and H281DRAFT_06089 are separated by 191 nucleotidesH281DRAFT_06089 and H281DRAFT_06090 are separated by 391 nucleotidesH281DRAFT_06090 and H281DRAFT_06091 are separated by 89 nucleotidesH281DRAFT_06091 and H281DRAFT_06092 are separated by 328 nucleotides H281DRAFT_06088: H281DRAFT_06088 - Nucleoside-diphosphate-sugar epimerase, at 106,092 to 106,730 _06088 H281DRAFT_06089: H281DRAFT_06089 - hypothetical protein, at 106,922 to 107,164 _06089 H281DRAFT_06090: H281DRAFT_06090 - N-ethylmaleimide reductase, at 107,556 to 108,770 _06090 H281DRAFT_06091: H281DRAFT_06091 - Protein required for attachment to host cells, at 108,860 to 109,216 _06091 H281DRAFT_06092: H281DRAFT_06092 - Outer membrane protein (porin), at 109,545 to 110,672 _06092 Position (kb) 107 108 109Strain fitness (log2 ratio) -1 0 1at 106.848 kb on - strandat 106.996 kb on + strand, within H281DRAFT_06089at 107.229 kb on + strandat 107.230 kb on - strandat 107.230 kb on - strandat 107.290 kb on - strandat 107.451 kb on + strandat 107.452 kb on - strandat 107.461 kb on - strandat 107.649 kb on + strandat 107.650 kb on - strandat 107.716 kb on + strand, within H281DRAFT_06090at 107.717 kb on - strand, within H281DRAFT_06090at 107.739 kb on + strand, within H281DRAFT_06090at 107.742 kb on + strand, within H281DRAFT_06090at 108.082 kb on - strand, within H281DRAFT_06090at 108.097 kb on - strand, within H281DRAFT_06090at 108.166 kb on - strand, within H281DRAFT_06090at 108.216 kb on + strand, within H281DRAFT_06090at 108.217 kb on - strand, within H281DRAFT_06090at 108.369 kb on + strand, within H281DRAFT_06090at 108.406 kb on - strand, within H281DRAFT_06090at 108.769 kb on - strandat 108.928 kb on + strand, within H281DRAFT_06091at 109.031 kb on + strand, within H281DRAFT_06091at 109.031 kb on + strand, within H281DRAFT_06091at 109.032 kb on - strand, within H281DRAFT_06091at 109.071 kb on + strand, within H281DRAFT_06091at 109.235 kb on + strandat 109.236 kb on - strandat 109.236 kb on - strandat 109.245 kb on + strandat 109.324 kb on - strandat 109.337 kb on + strandat 109.430 kb on + strandat 109.495 kb on + strandat 109.539 kb on + strandat 109.626 kb on + strandat 109.626 kb on + strandat 109.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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106,848 - -0.0
106,996 + H281DRAFT_06089 0.30 +0.2
107,229 + -0.3
107,230 - -0.4
107,230 - +0.4
107,290 - -0.5
107,451 + +0.7
107,452 - -0.3
107,461 - +0.5
107,649 + +0.2
107,650 - +0.4
107,716 + H281DRAFT_06090 0.13 +0.7
107,717 - H281DRAFT_06090 0.13 +1.6
107,739 + H281DRAFT_06090 0.15 -0.0
107,742 + H281DRAFT_06090 0.15 +0.0
108,082 - H281DRAFT_06090 0.43 +0.5
108,097 - H281DRAFT_06090 0.45 -0.2
108,166 - H281DRAFT_06090 0.50 +0.6
108,216 + H281DRAFT_06090 0.54 +0.9
108,217 - H281DRAFT_06090 0.54 +1.2
108,369 + H281DRAFT_06090 0.67 -0.4
108,406 - H281DRAFT_06090 0.70 -0.1
108,769 - -0.2
108,928 + H281DRAFT_06091 0.19 +1.1
109,031 + H281DRAFT_06091 0.48 +0.4
109,031 + H281DRAFT_06091 0.48 +0.9
109,032 - H281DRAFT_06091 0.48 +1.1
109,071 + H281DRAFT_06091 0.59 +0.2
109,235 + +0.3
109,236 - +0.6
109,236 - -0.8
109,245 + +0.5
109,324 - +0.2
109,337 + +0.4
109,430 + +1.7
109,495 + +0.8
109,539 + -0.0
109,626 + +0.5
109,626 + -1.2
109,653 + +0.0

Or see this region's nucleotide sequence