Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06022

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06021 and H281DRAFT_06022 are separated by 155 nucleotidesH281DRAFT_06022 and H281DRAFT_06023 are separated by 88 nucleotidesH281DRAFT_06023 and H281DRAFT_06024 are separated by 39 nucleotides H281DRAFT_06021: H281DRAFT_06021 - NADH dehydrogenase, at 24,751 to 26,097 _06021 H281DRAFT_06022: H281DRAFT_06022 - DNA polymerase I, at 26,253 to 28,994 _06022 H281DRAFT_06023: H281DRAFT_06023 - hypothetical protein, at 29,083 to 29,739 _06023 H281DRAFT_06024: H281DRAFT_06024 - transcriptional regulator, LysR family, at 29,779 to 30,711 _06024 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 25.754 kb on + strand, within H281DRAFT_06021at 25.923 kb on + strand, within H281DRAFT_06021at 26.027 kb on + strandat 26.086 kb on - strandat 26.110 kb on - strandat 26.110 kb on - strandat 26.203 kb on + strandat 26.204 kb on - strandat 26.209 kb on + strandat 26.210 kb on - strandat 26.210 kb on - strandat 26.210 kb on - strandat 26.210 kb on - strandat 26.210 kb on - strandat 26.210 kb on - strandat 26.489 kb on + strandat 26.599 kb on + strand, within H281DRAFT_06022at 26.600 kb on - strand, within H281DRAFT_06022at 26.639 kb on - strand, within H281DRAFT_06022at 26.681 kb on - strand, within H281DRAFT_06022at 26.681 kb on - strand, within H281DRAFT_06022at 27.132 kb on - strand, within H281DRAFT_06022at 27.168 kb on - strand, within H281DRAFT_06022at 27.329 kb on - strand, within H281DRAFT_06022at 27.464 kb on - strand, within H281DRAFT_06022at 27.503 kb on - strand, within H281DRAFT_06022at 27.550 kb on + strand, within H281DRAFT_06022at 27.550 kb on + strand, within H281DRAFT_06022at 27.697 kb on + strand, within H281DRAFT_06022at 27.697 kb on + strand, within H281DRAFT_06022at 27.698 kb on - strand, within H281DRAFT_06022at 27.698 kb on - strand, within H281DRAFT_06022at 27.745 kb on + strand, within H281DRAFT_06022at 27.796 kb on + strand, within H281DRAFT_06022at 27.913 kb on - strand, within H281DRAFT_06022at 28.048 kb on + strand, within H281DRAFT_06022at 28.049 kb on - strand, within H281DRAFT_06022at 28.995 kb on + strandat 29.094 kb on + strandat 29.095 kb on - strandat 29.155 kb on + strand, within H281DRAFT_06023at 29.155 kb on + strand, within H281DRAFT_06023at 29.188 kb on + strand, within H281DRAFT_06023at 29.192 kb on - strand, within H281DRAFT_06023at 29.192 kb on - strandat 29.407 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.672 kb on - strand, within H281DRAFT_06023at 29.731 kb on + strandat 29.732 kb on - strandat 29.738 kb on - strandat 29.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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25,754 + H281DRAFT_06021 0.74 +0.5
25,923 + H281DRAFT_06021 0.87 +0.5
26,027 + +0.6
26,086 - +0.2
26,110 - +0.6
26,110 - +0.5
26,203 + +0.1
26,204 - -0.1
26,209 + +0.8
26,210 - +0.1
26,210 - +0.1
26,210 - -0.1
26,210 - +0.6
26,210 - +0.7
26,210 - +0.2
26,489 + +1.0
26,599 + H281DRAFT_06022 0.13 -0.1
26,600 - H281DRAFT_06022 0.13 +0.1
26,639 - H281DRAFT_06022 0.14 -0.2
26,681 - H281DRAFT_06022 0.16 +1.1
26,681 - H281DRAFT_06022 0.16 +0.7
27,132 - H281DRAFT_06022 0.32 +0.7
27,168 - H281DRAFT_06022 0.33 +0.3
27,329 - H281DRAFT_06022 0.39 +0.6
27,464 - H281DRAFT_06022 0.44 -0.1
27,503 - H281DRAFT_06022 0.46 -0.1
27,550 + H281DRAFT_06022 0.47 +0.5
27,550 + H281DRAFT_06022 0.47 -0.0
27,697 + H281DRAFT_06022 0.53 +1.3
27,697 + H281DRAFT_06022 0.53 +0.7
27,698 - H281DRAFT_06022 0.53 +0.5
27,698 - H281DRAFT_06022 0.53 +0.8
27,745 + H281DRAFT_06022 0.54 -0.4
27,796 + H281DRAFT_06022 0.56 +0.4
27,913 - H281DRAFT_06022 0.61 +1.0
28,048 + H281DRAFT_06022 0.65 +0.8
28,049 - H281DRAFT_06022 0.65 -0.7
28,995 + -1.1
29,094 + -3.4
29,095 - -3.9
29,155 + H281DRAFT_06023 0.11 -1.0
29,155 + H281DRAFT_06023 0.11 -2.6
29,188 + H281DRAFT_06023 0.16 -3.3
29,192 - H281DRAFT_06023 0.17 -3.6
29,192 - +0.2
29,407 - H281DRAFT_06023 0.49 -1.1
29,481 - H281DRAFT_06023 0.61 -3.4
29,481 - H281DRAFT_06023 0.61 -4.6
29,481 - H281DRAFT_06023 0.61 -3.6
29,672 - H281DRAFT_06023 0.90 -0.1
29,731 + +0.8
29,732 - +0.4
29,738 - -0.2
29,738 - -0.0

Or see this region's nucleotide sequence