Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05851

Experiment: Phenylacetic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05849 and H281DRAFT_05850 are separated by 172 nucleotidesH281DRAFT_05850 and H281DRAFT_05851 are separated by 84 nucleotidesH281DRAFT_05851 and H281DRAFT_05852 are separated by 238 nucleotidesH281DRAFT_05852 and H281DRAFT_05853 are separated by 9 nucleotides H281DRAFT_05849: H281DRAFT_05849 - 4-hydroxyphenylpyruvate dioxygenase, at 129,644 to 130,741 _05849 H281DRAFT_05850: H281DRAFT_05850 - transcriptional regulator, AsnC family, at 130,914 to 131,411 _05850 H281DRAFT_05851: H281DRAFT_05851 - Protein N-acetyltransferase, RimJ/RimL family, at 131,496 to 132,164 _05851 H281DRAFT_05852: H281DRAFT_05852 - transcriptional regulator, TetR family, at 132,403 to 133,014 _05852 H281DRAFT_05853: H281DRAFT_05853 - Protein of unknown function, at 133,024 to 133,839 _05853 Position (kb) 131 132 133Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 130.573 kb on + strand, within H281DRAFT_05849at 130.573 kb on + strand, within H281DRAFT_05849at 130.574 kb on - strand, within H281DRAFT_05849at 130.592 kb on + strand, within H281DRAFT_05849at 130.592 kb on + strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strandat 130.593 kb on - strand, within H281DRAFT_05849at 130.606 kb on + strand, within H281DRAFT_05849at 130.606 kb on + strand, within H281DRAFT_05849at 130.683 kb on + strandat 130.884 kb on + strandat 130.924 kb on + strandat 130.930 kb on + strandat 130.949 kb on + strandat 131.041 kb on + strand, within H281DRAFT_05850at 131.076 kb on + strand, within H281DRAFT_05850at 131.077 kb on - strand, within H281DRAFT_05850at 131.124 kb on + strand, within H281DRAFT_05850at 131.124 kb on + strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.246 kb on + strand, within H281DRAFT_05850at 131.246 kb on + strand, within H281DRAFT_05850at 131.247 kb on - strand, within H281DRAFT_05850at 131.247 kb on - strand, within H281DRAFT_05850at 131.265 kb on + strand, within H281DRAFT_05850at 131.266 kb on - strand, within H281DRAFT_05850at 131.266 kb on - strand, within H281DRAFT_05850at 131.266 kb on - strand, within H281DRAFT_05850at 131.278 kb on + strand, within H281DRAFT_05850at 131.279 kb on - strand, within H281DRAFT_05850at 131.570 kb on - strand, within H281DRAFT_05851at 131.645 kb on - strand, within H281DRAFT_05851at 131.737 kb on + strand, within H281DRAFT_05851at 131.737 kb on + strand, within H281DRAFT_05851at 131.737 kb on + strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.801 kb on + strand, within H281DRAFT_05851at 131.929 kb on - strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.963 kb on - strand, within H281DRAFT_05851at 132.025 kb on - strand, within H281DRAFT_05851at 132.025 kb on - strand, within H281DRAFT_05851at 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.153 kb on - strandat 132.153 kb on - strandat 132.153 kb on - strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.400 kb on - strandat 132.400 kb on - strandat 132.400 kb on - strandat 132.492 kb on + strand, within H281DRAFT_05852at 132.576 kb on - strand, within H281DRAFT_05852at 132.608 kb on - strand, within H281DRAFT_05852at 132.659 kb on + strand, within H281DRAFT_05852at 132.659 kb on + strand, within H281DRAFT_05852at 132.660 kb on - strand, within H281DRAFT_05852at 132.708 kb on - strand, within H281DRAFT_05852at 132.819 kb on - strand, within H281DRAFT_05852at 132.860 kb on + strand, within H281DRAFT_05852at 132.860 kb on + strand, within H281DRAFT_05852at 132.861 kb on - strand, within H281DRAFT_05852at 132.861 kb on - strand, within H281DRAFT_05852at 132.864 kb on - strand, within H281DRAFT_05852at 132.864 kb on - strand, within H281DRAFT_05852at 132.869 kb on + strand, within H281DRAFT_05852at 133.026 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
remove
130,573 + H281DRAFT_05849 0.85 +0.3
130,573 + H281DRAFT_05849 0.85 +1.5
130,574 - H281DRAFT_05849 0.85 -0.4
130,592 + H281DRAFT_05849 0.86 -0.1
130,592 + H281DRAFT_05849 0.86 +0.8
130,593 - H281DRAFT_05849 0.86 -0.4
130,593 - H281DRAFT_05849 0.86 +0.1
130,593 - H281DRAFT_05849 0.86 +0.4
130,593 - H281DRAFT_05849 0.86 +0.2
130,593 - H281DRAFT_05849 0.86 +0.4
130,593 - H281DRAFT_05849 0.86 +0.1
130,593 - H281DRAFT_05849 0.86 +0.1
130,593 - +0.9
130,593 - H281DRAFT_05849 0.86 -1.4
130,606 + H281DRAFT_05849 0.88 -0.1
130,606 + H281DRAFT_05849 0.88 -0.2
130,683 + -0.1
130,884 + +0.4
130,924 + +0.4
130,930 + +0.4
130,949 + +0.3
131,041 + H281DRAFT_05850 0.26 +0.4
131,076 + H281DRAFT_05850 0.33 -0.5
131,077 - H281DRAFT_05850 0.33 +0.4
131,124 + H281DRAFT_05850 0.42 +0.5
131,124 + H281DRAFT_05850 0.42 +0.3
131,125 - H281DRAFT_05850 0.42 +0.3
131,125 - H281DRAFT_05850 0.42 -0.3
131,125 - H281DRAFT_05850 0.42 -0.4
131,125 - H281DRAFT_05850 0.42 +0.3
131,125 - H281DRAFT_05850 0.42 +0.3
131,125 - H281DRAFT_05850 0.42 -0.0
131,246 + H281DRAFT_05850 0.67 -1.3
131,246 + H281DRAFT_05850 0.67 -0.1
131,247 - H281DRAFT_05850 0.67 -1.3
131,247 - H281DRAFT_05850 0.67 -0.8
131,265 + H281DRAFT_05850 0.70 +0.5
131,266 - H281DRAFT_05850 0.71 -0.2
131,266 - H281DRAFT_05850 0.71 +0.0
131,266 - H281DRAFT_05850 0.71 +0.4
131,278 + H281DRAFT_05850 0.73 -0.2
131,279 - H281DRAFT_05850 0.73 +0.0
131,570 - H281DRAFT_05851 0.11 +0.3
131,645 - H281DRAFT_05851 0.22 +1.1
131,737 + H281DRAFT_05851 0.36 +1.0
131,737 + H281DRAFT_05851 0.36 +1.4
131,737 + H281DRAFT_05851 0.36 +2.4
131,738 - H281DRAFT_05851 0.36 +1.1
131,738 - H281DRAFT_05851 0.36 +1.1
131,738 - H281DRAFT_05851 0.36 +1.3
131,738 - H281DRAFT_05851 0.36 +1.1
131,738 - H281DRAFT_05851 0.36 +1.1
131,738 - H281DRAFT_05851 0.36 +0.8
131,738 - H281DRAFT_05851 0.36 +1.4
131,738 - H281DRAFT_05851 0.36 +0.5
131,738 - H281DRAFT_05851 0.36 +1.2
131,801 + H281DRAFT_05851 0.46 +1.1
131,929 - H281DRAFT_05851 0.65 +1.1
131,962 + H281DRAFT_05851 0.70 +1.2
131,962 + H281DRAFT_05851 0.70 +1.5
131,962 + H281DRAFT_05851 0.70 +1.6
131,962 + H281DRAFT_05851 0.70 +1.3
131,962 + H281DRAFT_05851 0.70 +1.3
131,963 - H281DRAFT_05851 0.70 +1.9
132,025 - H281DRAFT_05851 0.79 +1.1
132,025 - H281DRAFT_05851 0.79 +1.0
132,152 + +1.5
132,152 + +0.9
132,152 + +1.5
132,152 + +1.0
132,152 + +1.8
132,152 + +1.5
132,153 - +1.3
132,153 - +1.4
132,153 - +1.6
132,399 + +0.1
132,399 + -0.0
132,399 + +0.4
132,399 + -0.6
132,400 - +0.8
132,400 - +0.5
132,400 - -0.1
132,492 + H281DRAFT_05852 0.15 +3.8
132,576 - H281DRAFT_05852 0.28 +4.0
132,608 - H281DRAFT_05852 0.33 +3.7
132,659 + H281DRAFT_05852 0.42 +4.0
132,659 + H281DRAFT_05852 0.42 +3.8
132,660 - H281DRAFT_05852 0.42 +3.9
132,708 - H281DRAFT_05852 0.50 +3.2
132,819 - H281DRAFT_05852 0.68 +3.8
132,860 + H281DRAFT_05852 0.75 +3.5
132,860 + H281DRAFT_05852 0.75 +3.6
132,861 - H281DRAFT_05852 0.75 +4.2
132,861 - H281DRAFT_05852 0.75 +3.6
132,864 - H281DRAFT_05852 0.75 +3.9
132,864 - H281DRAFT_05852 0.75 +4.8
132,869 + H281DRAFT_05852 0.76 +3.8
133,026 - -0.7

Or see this region's nucleotide sequence