Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05845

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05844 and H281DRAFT_05845 are separated by 403 nucleotidesH281DRAFT_05845 and H281DRAFT_05846 are separated by 277 nucleotides H281DRAFT_05844: H281DRAFT_05844 - orotate phosphoribosyltransferase, at 120,303 to 120,989 _05844 H281DRAFT_05845: H281DRAFT_05845 - Predicted arabinose efflux permease, MFS family, at 121,393 to 122,625 _05845 H281DRAFT_05846: H281DRAFT_05846 - malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 122,903 to 125,185 _05846 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 120.595 kb on - strandat 120.685 kb on + strand, within H281DRAFT_05844at 120.686 kb on - strand, within H281DRAFT_05844at 121.066 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.122 kb on - strandat 121.134 kb on + strandat 121.251 kb on + strandat 121.327 kb on + strandat 121.328 kb on - strandat 121.328 kb on - strandat 121.369 kb on + strandat 121.369 kb on + strandat 121.370 kb on - strandat 121.480 kb on + strandat 121.636 kb on + strand, within H281DRAFT_05845at 121.637 kb on - strand, within H281DRAFT_05845at 121.637 kb on - strand, within H281DRAFT_05845at 121.718 kb on - strandat 121.718 kb on - strand, within H281DRAFT_05845at 121.719 kb on + strand, within H281DRAFT_05845at 121.719 kb on + strand, within H281DRAFT_05845at 121.837 kb on + strand, within H281DRAFT_05845at 121.837 kb on + strand, within H281DRAFT_05845at 121.837 kb on + strand, within H281DRAFT_05845at 121.837 kb on + strand, within H281DRAFT_05845at 121.837 kb on + strand, within H281DRAFT_05845at 121.838 kb on - strand, within H281DRAFT_05845at 121.838 kb on - strand, within H281DRAFT_05845at 121.838 kb on - strand, within H281DRAFT_05845at 121.838 kb on - strand, within H281DRAFT_05845at 121.866 kb on - strand, within H281DRAFT_05845at 121.866 kb on - strand, within H281DRAFT_05845at 121.866 kb on - strand, within H281DRAFT_05845at 122.090 kb on + strand, within H281DRAFT_05845at 122.090 kb on + strand, within H281DRAFT_05845at 122.090 kb on + strand, within H281DRAFT_05845at 122.091 kb on - strand, within H281DRAFT_05845at 122.114 kb on - strand, within H281DRAFT_05845at 122.117 kb on - strand, within H281DRAFT_05845at 122.143 kb on + strand, within H281DRAFT_05845at 122.143 kb on + strand, within H281DRAFT_05845at 122.143 kb on + strand, within H281DRAFT_05845at 122.144 kb on - strand, within H281DRAFT_05845at 122.164 kb on + strand, within H281DRAFT_05845at 122.241 kb on - strand, within H281DRAFT_05845at 122.281 kb on + strand, within H281DRAFT_05845at 122.281 kb on + strand, within H281DRAFT_05845at 122.282 kb on - strand, within H281DRAFT_05845at 122.282 kb on - strand, within H281DRAFT_05845at 122.314 kb on + strand, within H281DRAFT_05845at 122.521 kb on + strandat 122.522 kb on - strandat 122.561 kb on - strandat 122.561 kb on - strandat 122.561 kb on - strandat 122.565 kb on - strandat 122.730 kb on + strandat 122.730 kb on + strandat 122.730 kb on + strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.736 kb on - strandat 122.748 kb on + strandat 122.840 kb on - strandat 122.884 kb on + strandat 122.885 kb on - strandat 122.885 kb on - strandat 122.885 kb on - strandat 122.937 kb on - strandat 122.971 kb on + strandat 123.018 kb on - strandat 123.044 kb on - strandat 123.053 kb on + strandat 123.054 kb on - strandat 123.080 kb on + strandat 123.080 kb on + strandat 123.080 kb on + strandat 123.081 kb on - strandat 123.081 kb on - strandat 123.081 kb on - strandat 123.335 kb on + strand, within H281DRAFT_05846at 123.336 kb on - strand, within H281DRAFT_05846at 123.336 kb on - strand, within H281DRAFT_05846at 123.361 kb on + strand, within H281DRAFT_05846at 123.361 kb on + strand, within H281DRAFT_05846at 123.362 kb on - strand, within H281DRAFT_05846at 123.441 kb on + strand, within H281DRAFT_05846at 123.441 kb on + strand, within H281DRAFT_05846at 123.442 kb on - strand, within H281DRAFT_05846at 123.578 kb on + strand, within H281DRAFT_05846at 123.578 kb on + strand, within H281DRAFT_05846at 123.579 kb on - strand, within H281DRAFT_05846at 123.579 kb on - strand, within H281DRAFT_05846at 123.579 kb on - strand, within H281DRAFT_05846

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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120,595 - -0.2
120,685 + H281DRAFT_05844 0.56 -1.2
120,686 - H281DRAFT_05844 0.56 -2.2
121,066 - +0.3
121,078 - +0.8
121,078 - -0.7
121,078 - +0.4
121,078 - -0.9
121,122 - +2.7
121,134 + +0.8
121,251 + -0.5
121,327 + +0.1
121,328 - -0.3
121,328 - -0.4
121,369 + -0.9
121,369 + -0.1
121,370 - -1.4
121,480 + -0.0
121,636 + H281DRAFT_05845 0.20 -0.3
121,637 - H281DRAFT_05845 0.20 +0.6
121,637 - H281DRAFT_05845 0.20 -0.2
121,718 - -0.9
121,718 - H281DRAFT_05845 0.26 +0.5
121,719 + H281DRAFT_05845 0.26 +0.2
121,719 + H281DRAFT_05845 0.26 -0.2
121,837 + H281DRAFT_05845 0.36 -0.1
121,837 + H281DRAFT_05845 0.36 -0.4
121,837 + H281DRAFT_05845 0.36 +0.3
121,837 + H281DRAFT_05845 0.36 +0.1
121,837 + H281DRAFT_05845 0.36 -0.7
121,838 - H281DRAFT_05845 0.36 +0.7
121,838 - H281DRAFT_05845 0.36 -0.0
121,838 - H281DRAFT_05845 0.36 +0.2
121,838 - H281DRAFT_05845 0.36 +0.2
121,866 - H281DRAFT_05845 0.38 +0.4
121,866 - H281DRAFT_05845 0.38 -0.1
121,866 - H281DRAFT_05845 0.38 -0.1
122,090 + H281DRAFT_05845 0.57 -0.3
122,090 + H281DRAFT_05845 0.57 +0.5
122,090 + H281DRAFT_05845 0.57 -0.5
122,091 - H281DRAFT_05845 0.57 -1.2
122,114 - H281DRAFT_05845 0.58 +0.4
122,117 - H281DRAFT_05845 0.59 -0.3
122,143 + H281DRAFT_05845 0.61 +0.1
122,143 + H281DRAFT_05845 0.61 -0.2
122,143 + H281DRAFT_05845 0.61 -0.1
122,144 - H281DRAFT_05845 0.61 +0.3
122,164 + H281DRAFT_05845 0.63 -0.7
122,241 - H281DRAFT_05845 0.69 +1.0
122,281 + H281DRAFT_05845 0.72 -0.3
122,281 + H281DRAFT_05845 0.72 -0.4
122,282 - H281DRAFT_05845 0.72 +0.1
122,282 - H281DRAFT_05845 0.72 +0.6
122,314 + H281DRAFT_05845 0.75 -0.1
122,521 + -0.4
122,522 - +0.0
122,561 - +0.6
122,561 - -0.2
122,561 - -1.0
122,565 - +0.3
122,730 + -0.7
122,730 + +0.2
122,730 + -0.3
122,731 - -0.5
122,731 - -0.4
122,731 - -0.2
122,731 - -0.5
122,731 - +0.0
122,736 - -0.2
122,748 + +0.8
122,840 - +0.2
122,884 + +0.6
122,885 - -0.2
122,885 - +1.3
122,885 - +0.9
122,937 - +0.3
122,971 + +0.1
123,018 - +0.8
123,044 - +0.4
123,053 + +0.8
123,054 - +0.5
123,080 + +0.4
123,080 + +0.6
123,080 + +0.7
123,081 - +0.6
123,081 - -0.0
123,081 - +1.0
123,335 + H281DRAFT_05846 0.19 +0.8
123,336 - H281DRAFT_05846 0.19 +0.5
123,336 - H281DRAFT_05846 0.19 +0.8
123,361 + H281DRAFT_05846 0.20 +1.2
123,361 + H281DRAFT_05846 0.20 +0.6
123,362 - H281DRAFT_05846 0.20 +0.6
123,441 + H281DRAFT_05846 0.24 +1.1
123,441 + H281DRAFT_05846 0.24 -0.1
123,442 - H281DRAFT_05846 0.24 +0.4
123,578 + H281DRAFT_05846 0.30 +0.5
123,578 + H281DRAFT_05846 0.30 +0.4
123,579 - H281DRAFT_05846 0.30 +0.5
123,579 - H281DRAFT_05846 0.30 +1.2
123,579 - H281DRAFT_05846 0.30 +0.2

Or see this region's nucleotide sequence