Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05812

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05811 and H281DRAFT_05812 are separated by 97 nucleotidesH281DRAFT_05812 and H281DRAFT_05813 overlap by 4 nucleotidesH281DRAFT_05813 and H281DRAFT_05814 are separated by 201 nucleotides H281DRAFT_05811: H281DRAFT_05811 - UPF0271 protein, at 88,252 to 89,004 _05811 H281DRAFT_05812: H281DRAFT_05812 - biotin-dependent carboxylase uncharacterized domain-containing protein, at 89,102 to 90,154 _05812 H281DRAFT_05813: H281DRAFT_05813 - sensor histidine kinase inhibitor, KipI family, at 90,151 to 90,804 _05813 H281DRAFT_05814: H281DRAFT_05814 - Predicted transcription regulator, contains HTH domain, MarR family, at 91,006 to 91,518 _05814 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 88.208 kb on + strandat 88.209 kb on - strandat 88.254 kb on - strandat 88.254 kb on - strandat 88.254 kb on - strandat 88.528 kb on + strand, within H281DRAFT_05811at 88.528 kb on + strand, within H281DRAFT_05811at 88.529 kb on - strand, within H281DRAFT_05811at 88.676 kb on + strand, within H281DRAFT_05811at 88.677 kb on - strand, within H281DRAFT_05811at 88.677 kb on - strand, within H281DRAFT_05811at 88.769 kb on + strand, within H281DRAFT_05811at 88.770 kb on - strand, within H281DRAFT_05811at 89.015 kb on + strandat 89.015 kb on + strandat 89.153 kb on + strandat 89.154 kb on - strandat 89.178 kb on + strandat 89.179 kb on - strandat 89.214 kb on + strand, within H281DRAFT_05812at 89.474 kb on + strand, within H281DRAFT_05812at 89.527 kb on - strand, within H281DRAFT_05812at 89.793 kb on - strand, within H281DRAFT_05812at 89.793 kb on - strand, within H281DRAFT_05812at 90.160 kb on + strandat 90.160 kb on + strandat 90.288 kb on - strand, within H281DRAFT_05813at 90.390 kb on + strand, within H281DRAFT_05813at 90.391 kb on - strand, within H281DRAFT_05813at 90.391 kb on - strand, within H281DRAFT_05813at 90.391 kb on - strand, within H281DRAFT_05813at 90.392 kb on + strand, within H281DRAFT_05813at 90.392 kb on + strand, within H281DRAFT_05813at 90.392 kb on + strand, within H281DRAFT_05813at 90.393 kb on - strand, within H281DRAFT_05813at 90.393 kb on - strand, within H281DRAFT_05813at 90.393 kb on - strand, within H281DRAFT_05813at 90.431 kb on + strand, within H281DRAFT_05813at 90.431 kb on + strand, within H281DRAFT_05813at 90.432 kb on - strand, within H281DRAFT_05813at 90.432 kb on - strand, within H281DRAFT_05813at 90.432 kb on - strand, within H281DRAFT_05813at 90.525 kb on - strand, within H281DRAFT_05813at 90.890 kb on - strandat 90.890 kb on - strandat 90.890 kb on - strandat 90.890 kb on - strandat 90.905 kb on + strandat 90.906 kb on - strandat 90.923 kb on - strandat 90.923 kb on - strandat 90.963 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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88,208 + +1.2
88,209 - -1.2
88,254 - -1.7
88,254 - -1.8
88,254 - -1.1
88,528 + H281DRAFT_05811 0.37 +0.3
88,528 + H281DRAFT_05811 0.37 +0.8
88,529 - H281DRAFT_05811 0.37 +1.7
88,676 + H281DRAFT_05811 0.56 +1.1
88,677 - H281DRAFT_05811 0.56 -0.0
88,677 - H281DRAFT_05811 0.56 -0.1
88,769 + H281DRAFT_05811 0.69 -0.1
88,770 - H281DRAFT_05811 0.69 +0.9
89,015 + +2.3
89,015 + +1.2
89,153 + +1.6
89,154 - +1.4
89,178 + +2.5
89,179 - +2.2
89,214 + H281DRAFT_05812 0.11 +2.5
89,474 + H281DRAFT_05812 0.35 +2.1
89,527 - H281DRAFT_05812 0.40 +1.8
89,793 - H281DRAFT_05812 0.66 +1.8
89,793 - H281DRAFT_05812 0.66 +1.8
90,160 + +1.8
90,160 + +2.0
90,288 - H281DRAFT_05813 0.21 +1.6
90,390 + H281DRAFT_05813 0.37 +2.3
90,391 - H281DRAFT_05813 0.37 +0.1
90,391 - H281DRAFT_05813 0.37 +2.2
90,391 - H281DRAFT_05813 0.37 +1.7
90,392 + H281DRAFT_05813 0.37 +0.3
90,392 + H281DRAFT_05813 0.37 +1.7
90,392 + H281DRAFT_05813 0.37 +1.7
90,393 - H281DRAFT_05813 0.37 +1.8
90,393 - H281DRAFT_05813 0.37 +2.5
90,393 - H281DRAFT_05813 0.37 +1.8
90,431 + H281DRAFT_05813 0.43 +2.0
90,431 + H281DRAFT_05813 0.43 +1.0
90,432 - H281DRAFT_05813 0.43 +2.0
90,432 - H281DRAFT_05813 0.43 +1.1
90,432 - H281DRAFT_05813 0.43 +2.0
90,525 - H281DRAFT_05813 0.57 +2.3
90,890 - -1.8
90,890 - -0.4
90,890 - -2.9
90,890 - -2.2
90,905 + +1.5
90,906 - -3.2
90,923 - -2.9
90,923 - -1.6
90,963 + +1.3

Or see this region's nucleotide sequence