Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05809

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05808 and H281DRAFT_05809 are separated by 288 nucleotidesH281DRAFT_05809 and H281DRAFT_05810 overlap by 4 nucleotides H281DRAFT_05808: H281DRAFT_05808 - Tfp pilus assembly protein PilF, at 84,247 to 85,980 _05808 H281DRAFT_05809: H281DRAFT_05809 - Uncharacterized membrane protein, at 86,269 to 87,225 _05809 H281DRAFT_05810: H281DRAFT_05810 - Uncharacterized membrane protein, at 87,222 to 87,971 _05810 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3at 85.699 kb on + strand, within H281DRAFT_05808at 85.699 kb on + strand, within H281DRAFT_05808at 85.718 kb on + strand, within H281DRAFT_05808at 85.856 kb on + strandat 85.856 kb on + strandat 85.922 kb on + strandat 85.923 kb on - strandat 85.990 kb on - strandat 86.103 kb on + strandat 86.123 kb on + strandat 86.124 kb on - strandat 86.259 kb on - strandat 86.328 kb on + strandat 86.333 kb on - strandat 86.582 kb on + strand, within H281DRAFT_05809at 86.583 kb on - strand, within H281DRAFT_05809at 86.583 kb on - strand, within H281DRAFT_05809at 86.620 kb on - strand, within H281DRAFT_05809at 86.621 kb on + strand, within H281DRAFT_05809at 87.091 kb on + strand, within H281DRAFT_05809at 87.207 kb on - strandat 87.210 kb on + strandat 87.211 kb on - strandat 87.211 kb on - strandat 87.323 kb on - strand, within H281DRAFT_05810at 87.425 kb on + strand, within H281DRAFT_05810at 87.804 kb on - strand, within H281DRAFT_05810at 87.952 kb on - strandat 87.952 kb on - strandat 88.082 kb on - strandat 88.082 kb on - strandat 88.208 kb on + strandat 88.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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85,699 + H281DRAFT_05808 0.84 +0.7
85,699 + H281DRAFT_05808 0.84 -0.9
85,718 + H281DRAFT_05808 0.85 +0.5
85,856 + +0.3
85,856 + +0.8
85,922 + +0.7
85,923 - +0.4
85,990 - +0.7
86,103 + +1.2
86,123 + +0.6
86,124 - -0.6
86,259 - +1.4
86,328 + +1.4
86,333 - +1.8
86,582 + H281DRAFT_05809 0.33 +1.6
86,583 - H281DRAFT_05809 0.33 +1.4
86,583 - H281DRAFT_05809 0.33 +1.5
86,620 - H281DRAFT_05809 0.37 +1.7
86,621 + H281DRAFT_05809 0.37 +1.7
87,091 + H281DRAFT_05809 0.86 +1.5
87,207 - +1.2
87,210 + +1.5
87,211 - +2.8
87,211 - +1.5
87,323 - H281DRAFT_05810 0.13 +1.6
87,425 + H281DRAFT_05810 0.27 +1.8
87,804 - H281DRAFT_05810 0.78 +1.5
87,952 - +1.6
87,952 - +2.0
88,082 - -2.2
88,082 - -1.2
88,208 + +1.2
88,209 - -1.2

Or see this region's nucleotide sequence