Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05687

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05685 and H281DRAFT_05686 are separated by 114 nucleotidesH281DRAFT_05686 and H281DRAFT_05687 are separated by 428 nucleotidesH281DRAFT_05687 and H281DRAFT_05688 are separated by 130 nucleotides H281DRAFT_05685: H281DRAFT_05685 - hypothetical chaperone protein, at 101,619 to 102,869 _05685 H281DRAFT_05686: H281DRAFT_05686 - cold-shock DNA-binding protein family, at 102,984 to 103,187 _05686 H281DRAFT_05687: H281DRAFT_05687 - amino acid/polyamine/organocation transporter, APC superfamily, at 103,616 to 105,211 _05687 H281DRAFT_05688: H281DRAFT_05688 - Aromatic ring-opening dioxygenase, catalytic subunit, LigB family, at 105,342 to 106,127 _05688 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 102.727 kb on - strand, within H281DRAFT_05685at 102.802 kb on + strandat 102.803 kb on - strandat 102.889 kb on + strandat 102.890 kb on - strandat 102.900 kb on + strandat 102.901 kb on - strandat 102.926 kb on + strandat 102.927 kb on - strandat 102.928 kb on + strandat 102.985 kb on + strandat 102.985 kb on + strandat 102.986 kb on - strandat 102.986 kb on - strandat 103.190 kb on + strandat 103.190 kb on + strandat 103.190 kb on + strandat 103.190 kb on + strandat 103.191 kb on - strandat 103.191 kb on - strandat 103.191 kb on - strandat 103.191 kb on - strandat 103.201 kb on - strandat 103.209 kb on + strandat 103.210 kb on - strandat 103.210 kb on - strandat 103.210 kb on - strandat 103.213 kb on + strandat 103.214 kb on - strandat 103.293 kb on - strandat 103.293 kb on - strandat 103.337 kb on + strandat 103.337 kb on + strandat 103.338 kb on - strandat 103.339 kb on + strandat 103.339 kb on + strandat 103.416 kb on + strandat 103.416 kb on + strandat 103.497 kb on + strandat 103.498 kb on - strandat 103.520 kb on + strandat 103.520 kb on + strandat 103.521 kb on - strandat 103.521 kb on - strandat 103.539 kb on + strandat 103.539 kb on + strandat 103.539 kb on + strandat 103.539 kb on + strandat 103.539 kb on + strandat 103.540 kb on - strandat 103.540 kb on - strandat 103.581 kb on + strandat 103.581 kb on + strandat 103.581 kb on + strandat 103.582 kb on - strandat 103.627 kb on + strandat 103.628 kb on - strandat 103.629 kb on + strandat 103.629 kb on + strandat 103.629 kb on + strandat 103.630 kb on - strandat 103.630 kb on - strandat 103.770 kb on + strandat 103.771 kb on - strandat 103.771 kb on - strandat 103.780 kb on + strand, within H281DRAFT_05687at 103.793 kb on + strand, within H281DRAFT_05687at 103.794 kb on - strand, within H281DRAFT_05687at 103.879 kb on + strand, within H281DRAFT_05687at 103.946 kb on + strand, within H281DRAFT_05687at 103.946 kb on + strand, within H281DRAFT_05687at 103.946 kb on + strand, within H281DRAFT_05687at 103.946 kb on + strand, within H281DRAFT_05687at 103.947 kb on - strand, within H281DRAFT_05687at 103.947 kb on - strand, within H281DRAFT_05687at 103.947 kb on - strand, within H281DRAFT_05687at 104.001 kb on + strand, within H281DRAFT_05687at 104.001 kb on + strand, within H281DRAFT_05687at 104.005 kb on + strand, within H281DRAFT_05687at 104.005 kb on + strand, within H281DRAFT_05687at 104.006 kb on - strand, within H281DRAFT_05687at 104.006 kb on - strand, within H281DRAFT_05687at 104.045 kb on + strand, within H281DRAFT_05687at 104.045 kb on + strand, within H281DRAFT_05687at 104.045 kb on + strand, within H281DRAFT_05687at 104.046 kb on - strand, within H281DRAFT_05687at 104.046 kb on - strand, within H281DRAFT_05687at 104.060 kb on + strand, within H281DRAFT_05687at 104.061 kb on - strand, within H281DRAFT_05687at 104.201 kb on + strand, within H281DRAFT_05687at 104.360 kb on + strand, within H281DRAFT_05687at 104.360 kb on + strand, within H281DRAFT_05687at 104.361 kb on - strand, within H281DRAFT_05687at 104.361 kb on - strand, within H281DRAFT_05687at 104.361 kb on - strand, within H281DRAFT_05687at 104.409 kb on + strand, within H281DRAFT_05687at 104.409 kb on + strand, within H281DRAFT_05687at 104.409 kb on + strand, within H281DRAFT_05687at 104.409 kb on + strand, within H281DRAFT_05687at 104.410 kb on - strand, within H281DRAFT_05687at 104.410 kb on - strand, within H281DRAFT_05687at 104.410 kb on - strand, within H281DRAFT_05687at 104.410 kb on - strand, within H281DRAFT_05687at 104.498 kb on + strand, within H281DRAFT_05687at 104.498 kb on + strand, within H281DRAFT_05687at 104.498 kb on + strand, within H281DRAFT_05687at 104.540 kb on + strand, within H281DRAFT_05687at 104.540 kb on + strand, within H281DRAFT_05687at 104.541 kb on - strand, within H281DRAFT_05687at 104.541 kb on - strandat 104.541 kb on - strand, within H281DRAFT_05687at 104.541 kb on - strand, within H281DRAFT_05687at 104.567 kb on + strand, within H281DRAFT_05687at 104.568 kb on - strand, within H281DRAFT_05687at 104.568 kb on - strand, within H281DRAFT_05687at 104.568 kb on - strand, within H281DRAFT_05687at 104.741 kb on + strand, within H281DRAFT_05687at 104.742 kb on - strand, within H281DRAFT_05687at 104.809 kb on + strand, within H281DRAFT_05687at 104.867 kb on + strand, within H281DRAFT_05687at 104.868 kb on - strand, within H281DRAFT_05687at 104.930 kb on + strand, within H281DRAFT_05687at 104.930 kb on + strand, within H281DRAFT_05687at 104.930 kb on + strand, within H281DRAFT_05687at 104.930 kb on + strand, within H281DRAFT_05687at 104.931 kb on - strandat 104.931 kb on - strand, within H281DRAFT_05687at 104.931 kb on - strand, within H281DRAFT_05687at 104.936 kb on + strand, within H281DRAFT_05687at 104.936 kb on + strand, within H281DRAFT_05687at 104.936 kb on + strand, within H281DRAFT_05687at 104.936 kb on + strand, within H281DRAFT_05687at 104.936 kb on + strand, within H281DRAFT_05687at 104.937 kb on - strand, within H281DRAFT_05687at 104.937 kb on - strand, within H281DRAFT_05687at 105.006 kb on - strand, within H281DRAFT_05687at 105.119 kb on + strandat 105.119 kb on + strandat 105.119 kb on + strandat 105.119 kb on + strandat 105.119 kb on + strandat 105.120 kb on - strandat 105.120 kb on - strandat 105.120 kb on - strandat 105.122 kb on + strandat 105.122 kb on + strandat 105.155 kb on + strandat 105.155 kb on + strandat 105.209 kb on + strandat 105.209 kb on + strandat 105.209 kb on + strandat 105.210 kb on - strandat 105.210 kb on - strandat 105.248 kb on - strandat 105.361 kb on + strandat 105.361 kb on + strandat 105.361 kb on + strandat 105.361 kb on + strandat 105.361 kb on + strandat 105.361 kb on + strandat 105.361 kb on + strandat 105.388 kb on + strandat 105.389 kb on - strandat 105.418 kb on + strandat 105.819 kb on + strand, within H281DRAFT_05688at 105.819 kb on + strand, within H281DRAFT_05688at 105.820 kb on - strandat 105.820 kb on - strand, within H281DRAFT_05688at 105.820 kb on - strand, within H281DRAFT_05688at 105.820 kb on - strand, within H281DRAFT_05688at 105.907 kb on + strand, within H281DRAFT_05688at 105.907 kb on + strand, within H281DRAFT_05688at 105.907 kb on + strand, within H281DRAFT_05688at 105.908 kb on - strand, within H281DRAFT_05688at 105.908 kb on - strand, within H281DRAFT_05688at 105.928 kb on + strand, within H281DRAFT_05688at 106.117 kb on - strandat 106.169 kb on + strandat 106.170 kb on - strandat 106.170 kb on - strandat 106.170 kb on - strandat 106.170 kb on - strandat 106.170 kb on - strandat 106.177 kb on + strandat 106.177 kb on + strandat 106.178 kb on - strandat 106.178 kb on - strandat 106.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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102,727 - H281DRAFT_05685 0.89 +1.5
102,802 + +0.4
102,803 - +0.4
102,889 + -0.1
102,890 - -2.1
102,900 + +0.4
102,901 - -0.4
102,926 + +0.4
102,927 - +0.1
102,928 + -0.1
102,985 + -0.6
102,985 + -2.8
102,986 - -1.6
102,986 - -0.8
103,190 + -2.9
103,190 + -2.2
103,190 + -5.0
103,190 + -1.6
103,191 - -0.1
103,191 - -0.6
103,191 - -1.7
103,191 - -1.0
103,201 - -0.6
103,209 + -2.6
103,210 - -1.0
103,210 - -1.1
103,210 - -1.1
103,213 + -3.6
103,214 - -0.3
103,293 - -0.5
103,293 - -0.2
103,337 + -2.8
103,337 + -3.1
103,338 - -1.8
103,339 + -3.3
103,339 + -2.3
103,416 + -2.4
103,416 + -3.2
103,497 + -0.8
103,498 - +1.7
103,520 + -1.7
103,520 + -0.6
103,521 - +1.5
103,521 - +1.3
103,539 + +0.5
103,539 + +0.1
103,539 + +1.0
103,539 + +0.8
103,539 + +1.4
103,540 - +1.5
103,540 - +1.5
103,581 + +0.3
103,581 + -0.2
103,581 + +1.1
103,582 - -1.3
103,627 + +1.2
103,628 - +0.3
103,629 + +1.3
103,629 + +0.9
103,629 + +1.1
103,630 - +0.8
103,630 - +0.9
103,770 + +1.2
103,771 - +0.2
103,771 - +1.5
103,780 + H281DRAFT_05687 0.10 +1.4
103,793 + H281DRAFT_05687 0.11 +1.2
103,794 - H281DRAFT_05687 0.11 +2.3
103,879 + H281DRAFT_05687 0.16 +1.6
103,946 + H281DRAFT_05687 0.21 +0.9
103,946 + H281DRAFT_05687 0.21 +1.8
103,946 + H281DRAFT_05687 0.21 +1.3
103,946 + H281DRAFT_05687 0.21 +1.3
103,947 - H281DRAFT_05687 0.21 +1.5
103,947 - H281DRAFT_05687 0.21 +1.8
103,947 - H281DRAFT_05687 0.21 +1.2
104,001 + H281DRAFT_05687 0.24 +1.5
104,001 + H281DRAFT_05687 0.24 +1.5
104,005 + H281DRAFT_05687 0.24 +1.0
104,005 + H281DRAFT_05687 0.24 +1.7
104,006 - H281DRAFT_05687 0.24 +1.6
104,006 - H281DRAFT_05687 0.24 +0.7
104,045 + H281DRAFT_05687 0.27 +1.3
104,045 + H281DRAFT_05687 0.27 +0.7
104,045 + H281DRAFT_05687 0.27 +1.4
104,046 - H281DRAFT_05687 0.27 +0.5
104,046 - H281DRAFT_05687 0.27 +1.5
104,060 + H281DRAFT_05687 0.28 +1.2
104,061 - H281DRAFT_05687 0.28 +0.9
104,201 + H281DRAFT_05687 0.37 +1.4
104,360 + H281DRAFT_05687 0.47 +1.5
104,360 + H281DRAFT_05687 0.47 +1.3
104,361 - H281DRAFT_05687 0.47 +1.8
104,361 - H281DRAFT_05687 0.47 +1.6
104,361 - H281DRAFT_05687 0.47 +1.8
104,409 + H281DRAFT_05687 0.50 +1.1
104,409 + H281DRAFT_05687 0.50 +1.6
104,409 + H281DRAFT_05687 0.50 +1.2
104,409 + H281DRAFT_05687 0.50 +0.0
104,410 - H281DRAFT_05687 0.50 +0.7
104,410 - H281DRAFT_05687 0.50 +1.0
104,410 - H281DRAFT_05687 0.50 +1.4
104,410 - H281DRAFT_05687 0.50 +1.6
104,498 + H281DRAFT_05687 0.55 +0.9
104,498 + H281DRAFT_05687 0.55 +1.9
104,498 + H281DRAFT_05687 0.55 +1.9
104,540 + H281DRAFT_05687 0.58 +1.4
104,540 + H281DRAFT_05687 0.58 +1.5
104,541 - H281DRAFT_05687 0.58 +1.3
104,541 - +2.5
104,541 - H281DRAFT_05687 0.58 +1.4
104,541 - H281DRAFT_05687 0.58 +1.2
104,567 + H281DRAFT_05687 0.60 +1.2
104,568 - H281DRAFT_05687 0.60 +1.7
104,568 - H281DRAFT_05687 0.60 +1.6
104,568 - H281DRAFT_05687 0.60 +0.7
104,741 + H281DRAFT_05687 0.70 +1.9
104,742 - H281DRAFT_05687 0.71 +2.0
104,809 + H281DRAFT_05687 0.75 +1.4
104,867 + H281DRAFT_05687 0.78 +1.7
104,868 - H281DRAFT_05687 0.78 +1.3
104,930 + H281DRAFT_05687 0.82 +1.2
104,930 + H281DRAFT_05687 0.82 +1.0
104,930 + H281DRAFT_05687 0.82 +1.4
104,930 + H281DRAFT_05687 0.82 +1.4
104,931 - +1.9
104,931 - H281DRAFT_05687 0.82 +1.6
104,931 - H281DRAFT_05687 0.82 +1.4
104,936 + H281DRAFT_05687 0.83 +1.2
104,936 + H281DRAFT_05687 0.83 +1.8
104,936 + H281DRAFT_05687 0.83 +1.4
104,936 + H281DRAFT_05687 0.83 +1.1
104,936 + H281DRAFT_05687 0.83 +2.2
104,937 - H281DRAFT_05687 0.83 +1.4
104,937 - H281DRAFT_05687 0.83 +1.0
105,006 - H281DRAFT_05687 0.87 +1.7
105,119 + +1.6
105,119 + +1.7
105,119 + -0.3
105,119 + +1.1
105,119 + +1.0
105,120 - +1.3
105,120 - +0.9
105,120 - +2.2
105,122 + +1.0
105,122 + +1.1
105,155 + +1.1
105,155 + +1.0
105,209 + +0.2
105,209 + +0.9
105,209 + +0.8
105,210 - +0.6
105,210 - +0.9
105,248 - +1.1
105,361 + -0.2
105,361 + +0.0
105,361 + -0.3
105,361 + -0.6
105,361 + -0.6
105,361 + -0.2
105,361 + +0.2
105,388 + -0.7
105,389 - -0.3
105,418 + -0.6
105,819 + H281DRAFT_05688 0.61 +0.1
105,819 + H281DRAFT_05688 0.61 +0.6
105,820 - -0.1
105,820 - H281DRAFT_05688 0.61 -0.3
105,820 - H281DRAFT_05688 0.61 +1.4
105,820 - H281DRAFT_05688 0.61 +0.4
105,907 + H281DRAFT_05688 0.72 -0.7
105,907 + H281DRAFT_05688 0.72 +0.2
105,907 + H281DRAFT_05688 0.72 -0.0
105,908 - H281DRAFT_05688 0.72 +0.2
105,908 - H281DRAFT_05688 0.72 +1.1
105,928 + H281DRAFT_05688 0.75 -0.7
106,117 - +0.2
106,169 + +1.0
106,170 - +0.0
106,170 - +1.4
106,170 - +0.8
106,170 - +1.8
106,170 - -0.5
106,177 + -0.8
106,177 + -0.2
106,178 - +0.4
106,178 - +0.1
106,178 - -0.2

Or see this region's nucleotide sequence