Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05665

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05662 and H281DRAFT_05663 are separated by 81 nucleotidesH281DRAFT_05663 and H281DRAFT_05664 are separated by 194 nucleotidesH281DRAFT_05664 and H281DRAFT_05665 are separated by 39 nucleotidesH281DRAFT_05665 and H281DRAFT_05666 are separated by 34 nucleotides H281DRAFT_05662: H281DRAFT_05662 - Uncharacterized membrane protein, at 81,514 to 81,909 _05662 H281DRAFT_05663: H281DRAFT_05663 - histidine triad (HIT) family protein, at 81,991 to 82,356 _05663 H281DRAFT_05664: H281DRAFT_05664 - sec-independent protein translocase protein TatA, at 82,551 to 82,787 _05664 H281DRAFT_05665: H281DRAFT_05665 - sec-independent protein translocase protein TatB, at 82,827 to 83,345 _05665 H281DRAFT_05666: H281DRAFT_05666 - Sec-independent protein translocase TatC, at 83,380 to 84,159 _05666 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1at 81.839 kb on - strand, within H281DRAFT_05662at 81.843 kb on + strand, within H281DRAFT_05662at 81.843 kb on + strand, within H281DRAFT_05662at 81.843 kb on + strand, within H281DRAFT_05662at 81.844 kb on - strand, within H281DRAFT_05662at 81.844 kb on - strand, within H281DRAFT_05662at 81.846 kb on + strand, within H281DRAFT_05662at 81.846 kb on + strand, within H281DRAFT_05662at 81.846 kb on + strand, within H281DRAFT_05662at 81.846 kb on + strand, within H281DRAFT_05662at 81.847 kb on - strand, within H281DRAFT_05662at 81.847 kb on - strand, within H281DRAFT_05662at 81.862 kb on + strand, within H281DRAFT_05662at 81.863 kb on - strand, within H281DRAFT_05662at 81.863 kb on - strand, within H281DRAFT_05662at 81.863 kb on - strand, within H281DRAFT_05662at 81.868 kb on + strand, within H281DRAFT_05662at 81.868 kb on + strand, within H281DRAFT_05662at 81.869 kb on - strand, within H281DRAFT_05662at 81.873 kb on + strandat 81.923 kb on + strandat 81.923 kb on + strandat 81.973 kb on + strandat 81.987 kb on + strandat 81.987 kb on + strandat 81.988 kb on - strandat 81.988 kb on - strandat 81.988 kb on - strandat 81.988 kb on - strandat 81.988 kb on - strandat 82.185 kb on + strand, within H281DRAFT_05663at 82.185 kb on + strand, within H281DRAFT_05663at 82.186 kb on - strand, within H281DRAFT_05663at 82.186 kb on - strand, within H281DRAFT_05663at 82.186 kb on - strand, within H281DRAFT_05663at 82.186 kb on - strand, within H281DRAFT_05663at 82.234 kb on + strand, within H281DRAFT_05663at 82.234 kb on + strand, within H281DRAFT_05663at 82.300 kb on + strand, within H281DRAFT_05663at 82.300 kb on + strand, within H281DRAFT_05663at 82.410 kb on + strandat 82.458 kb on + strandat 82.463 kb on + strandat 82.463 kb on + strandat 83.365 kb on + strandat 84.236 kb on + strandat 84.254 kb on + strandat 84.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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81,839 - H281DRAFT_05662 0.82 -0.3
81,843 + H281DRAFT_05662 0.83 +0.6
81,843 + H281DRAFT_05662 0.83 +0.5
81,843 + H281DRAFT_05662 0.83 -1.8
81,844 - H281DRAFT_05662 0.83 +0.3
81,844 - H281DRAFT_05662 0.83 +0.3
81,846 + H281DRAFT_05662 0.84 +0.8
81,846 + H281DRAFT_05662 0.84 +0.5
81,846 + H281DRAFT_05662 0.84 +0.1
81,846 + H281DRAFT_05662 0.84 -0.8
81,847 - H281DRAFT_05662 0.84 -0.9
81,847 - H281DRAFT_05662 0.84 +0.5
81,862 + H281DRAFT_05662 0.88 -0.6
81,863 - H281DRAFT_05662 0.88 +0.5
81,863 - H281DRAFT_05662 0.88 -0.1
81,863 - H281DRAFT_05662 0.88 +0.2
81,868 + H281DRAFT_05662 0.89 -0.4
81,868 + H281DRAFT_05662 0.89 -0.2
81,869 - H281DRAFT_05662 0.90 +0.0
81,873 + -1.1
81,923 + -0.3
81,923 + -0.1
81,973 + -0.3
81,987 + +0.0
81,987 + -0.6
81,988 - +0.2
81,988 - -0.3
81,988 - -1.7
81,988 - -0.4
81,988 - +0.3
82,185 + H281DRAFT_05663 0.53 -2.1
82,185 + H281DRAFT_05663 0.53 +0.1
82,186 - H281DRAFT_05663 0.53 +0.3
82,186 - H281DRAFT_05663 0.53 -1.5
82,186 - H281DRAFT_05663 0.53 -0.6
82,186 - H281DRAFT_05663 0.53 +0.1
82,234 + H281DRAFT_05663 0.66 +0.1
82,234 + H281DRAFT_05663 0.66 -0.7
82,300 + H281DRAFT_05663 0.84 -0.0
82,300 + H281DRAFT_05663 0.84 +1.3
82,410 + -0.2
82,458 + -0.3
82,463 + +0.1
82,463 + -0.0
83,365 + +1.5
84,236 + -0.3
84,254 + +0.1
84,332 + -0.5

Or see this region's nucleotide sequence