Experiment: Phenylacetic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05507 and H281DRAFT_05508 are separated by 668 nucleotides H281DRAFT_05508 and H281DRAFT_05509 are separated by 130 nucleotides H281DRAFT_05509 and H281DRAFT_05510 overlap by 4 nucleotides
H281DRAFT_05507: H281DRAFT_05507 - DNA-binding transcriptional regulator, LysR family, at 87,161 to 88,027
_05507
H281DRAFT_05508: H281DRAFT_05508 - Alcohol dehydrogenase, class IV, at 88,696 to 89,847
_05508
H281DRAFT_05509: H281DRAFT_05509 - DNA replication protein DnaC, at 89,978 to 90,796
_05509
H281DRAFT_05510: H281DRAFT_05510 - Transposase, at 90,793 to 91,818
_05510
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 87.805 kb on + strand, within H281DRAFT_05507 at 87.805 kb on + strand, within H281DRAFT_05507 at 87.847 kb on - strand, within H281DRAFT_05507 at 87.919 kb on - strand, within H281DRAFT_05507 at 88.116 kb on + strand at 88.117 kb on - strand at 88.186 kb on + strand at 88.187 kb on - strand at 88.192 kb on + strand at 88.261 kb on + strand at 88.261 kb on + strand at 88.400 kb on - strand at 88.418 kb on - strand at 88.552 kb on - strand at 88.713 kb on - strand at 88.755 kb on + strand at 88.792 kb on + strand at 88.870 kb on + strand, within H281DRAFT_05508 at 88.874 kb on + strand, within H281DRAFT_05508 at 88.874 kb on + strand, within H281DRAFT_05508 at 88.949 kb on + strand, within H281DRAFT_05508 at 89.094 kb on + strand, within H281DRAFT_05508 at 89.137 kb on + strand, within H281DRAFT_05508 at 89.137 kb on + strand, within H281DRAFT_05508 at 89.244 kb on - strand, within H281DRAFT_05508 at 89.290 kb on + strand, within H281DRAFT_05508 at 89.291 kb on - strand, within H281DRAFT_05508 at 89.350 kb on + strand, within H281DRAFT_05508 at 89.486 kb on + strand, within H281DRAFT_05508 at 89.487 kb on - strand, within H281DRAFT_05508 at 89.487 kb on - strand, within H281DRAFT_05508 at 89.487 kb on - strand, within H281DRAFT_05508 at 89.490 kb on + strand, within H281DRAFT_05508 at 89.540 kb on - strand, within H281DRAFT_05508 at 89.540 kb on - strand, within H281DRAFT_05508 at 89.548 kb on - strand, within H281DRAFT_05508 at 89.866 kb on + strand at 89.866 kb on + strand at 89.961 kb on + strand at 89.974 kb on - strand at 89.979 kb on + strand at 90.276 kb on + strand, within H281DRAFT_05509 at 90.368 kb on + strand, within H281DRAFT_05509 at 90.368 kb on + strand, within H281DRAFT_05509 at 90.368 kb on + strand, within H281DRAFT_05509 at 90.369 kb on - strand, within H281DRAFT_05509 at 90.429 kb on + strand, within H281DRAFT_05509 at 90.480 kb on - strand, within H281DRAFT_05509 at 90.660 kb on - strand, within H281DRAFT_05509 at 90.663 kb on - strand, within H281DRAFT_05509 at 90.764 kb on + strand at 90.821 kb on + strand at 90.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic (C) remove 87,805 + H281DRAFT_05507 0.74 +1.8 87,805 + H281DRAFT_05507 0.74 +0.3 87,847 - H281DRAFT_05507 0.79 +0.3 87,919 - H281DRAFT_05507 0.87 +0.7 88,116 + -0.0 88,117 - +0.9 88,186 + -0.3 88,187 - +1.1 88,192 + +0.6 88,261 + +0.3 88,261 + -0.0 88,400 - +1.3 88,418 - +0.5 88,552 - -0.1 88,713 - -0.2 88,755 + +1.5 88,792 + +0.2 88,870 + H281DRAFT_05508 0.15 +0.3 88,874 + H281DRAFT_05508 0.15 -0.1 88,874 + H281DRAFT_05508 0.15 +0.9 88,949 + H281DRAFT_05508 0.22 +0.4 89,094 + H281DRAFT_05508 0.35 +0.9 89,137 + H281DRAFT_05508 0.38 +1.0 89,137 + H281DRAFT_05508 0.38 +0.7 89,244 - H281DRAFT_05508 0.48 -0.7 89,290 + H281DRAFT_05508 0.52 -0.2 89,291 - H281DRAFT_05508 0.52 +0.9 89,350 + H281DRAFT_05508 0.57 -0.1 89,486 + H281DRAFT_05508 0.69 -0.0 89,487 - H281DRAFT_05508 0.69 -0.3 89,487 - H281DRAFT_05508 0.69 +0.6 89,487 - H281DRAFT_05508 0.69 -0.3 89,490 + H281DRAFT_05508 0.69 +1.0 89,540 - H281DRAFT_05508 0.73 +0.4 89,540 - H281DRAFT_05508 0.73 -0.5 89,548 - H281DRAFT_05508 0.74 +0.1 89,866 + -0.6 89,866 + +0.4 89,961 + +0.2 89,974 - -1.0 89,979 + +4.0 90,276 + H281DRAFT_05509 0.36 -0.8 90,368 + H281DRAFT_05509 0.48 +0.4 90,368 + H281DRAFT_05509 0.48 +0.2 90,368 + H281DRAFT_05509 0.48 +0.2 90,369 - H281DRAFT_05509 0.48 -0.9 90,429 + H281DRAFT_05509 0.55 -0.0 90,480 - H281DRAFT_05509 0.61 +1.3 90,660 - H281DRAFT_05509 0.83 -0.2 90,663 - H281DRAFT_05509 0.84 -0.7 90,764 + +0.3 90,821 + -0.9 90,822 - +0.5
Or see this region's nucleotide sequence