Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05108

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05107 and H281DRAFT_05108 are separated by 31 nucleotidesH281DRAFT_05108 and H281DRAFT_05109 are separated by 100 nucleotides H281DRAFT_05107: H281DRAFT_05107 - MFS transporter, DHA2 family, multidrug resistance protein, at 53,131 to 54,693 _05107 H281DRAFT_05108: H281DRAFT_05108 - membrane fusion protein, multidrug efflux system, at 54,725 to 55,981 _05108 H281DRAFT_05109: H281DRAFT_05109 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 56,082 to 57,650 _05109 Position (kb) 54 55 56Strain fitness (log2 ratio) -1 0 1at 53.774 kb on + strand, within H281DRAFT_05107at 53.825 kb on + strand, within H281DRAFT_05107at 53.826 kb on - strand, within H281DRAFT_05107at 53.977 kb on - strand, within H281DRAFT_05107at 54.161 kb on + strand, within H281DRAFT_05107at 54.161 kb on + strand, within H281DRAFT_05107at 54.161 kb on + strand, within H281DRAFT_05107at 54.162 kb on - strand, within H281DRAFT_05107at 54.162 kb on - strand, within H281DRAFT_05107at 54.726 kb on + strandat 54.846 kb on + strandat 55.123 kb on - strand, within H281DRAFT_05108at 55.223 kb on - strand, within H281DRAFT_05108at 55.330 kb on - strand, within H281DRAFT_05108at 55.584 kb on + strand, within H281DRAFT_05108at 55.833 kb on + strand, within H281DRAFT_05108at 55.834 kb on - strand, within H281DRAFT_05108at 55.836 kb on + strand, within H281DRAFT_05108at 55.845 kb on + strand, within H281DRAFT_05108at 55.845 kb on + strand, within H281DRAFT_05108at 55.845 kb on + strand, within H281DRAFT_05108at 56.051 kb on + strandat 56.285 kb on + strand, within H281DRAFT_05109at 56.359 kb on + strand, within H281DRAFT_05109at 56.360 kb on - strand, within H281DRAFT_05109at 56.380 kb on + strand, within H281DRAFT_05109at 56.380 kb on + strand, within H281DRAFT_05109at 56.497 kb on + strand, within H281DRAFT_05109at 56.497 kb on + strand, within H281DRAFT_05109at 56.497 kb on + strand, within H281DRAFT_05109at 56.498 kb on - strand, within H281DRAFT_05109at 56.498 kb on - strand, within H281DRAFT_05109at 56.498 kb on - strand, within H281DRAFT_05109at 56.498 kb on - strand, within H281DRAFT_05109at 56.748 kb on - strand, within H281DRAFT_05109at 56.801 kb on + strand, within H281DRAFT_05109at 56.802 kb on - strand, within H281DRAFT_05109at 56.879 kb on - strand, within H281DRAFT_05109at 56.936 kb on + strand, within H281DRAFT_05109

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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53,774 + H281DRAFT_05107 0.41 -0.4
53,825 + H281DRAFT_05107 0.44 +0.6
53,826 - H281DRAFT_05107 0.44 -0.0
53,977 - H281DRAFT_05107 0.54 +0.4
54,161 + H281DRAFT_05107 0.66 +0.5
54,161 + H281DRAFT_05107 0.66 -1.1
54,161 + H281DRAFT_05107 0.66 +0.4
54,162 - H281DRAFT_05107 0.66 +0.8
54,162 - H281DRAFT_05107 0.66 +0.7
54,726 + +0.3
54,846 + +0.9
55,123 - H281DRAFT_05108 0.32 -0.5
55,223 - H281DRAFT_05108 0.40 -0.5
55,330 - H281DRAFT_05108 0.48 +0.6
55,584 + H281DRAFT_05108 0.68 +1.1
55,833 + H281DRAFT_05108 0.88 +0.1
55,834 - H281DRAFT_05108 0.88 +0.4
55,836 + H281DRAFT_05108 0.88 +0.4
55,845 + H281DRAFT_05108 0.89 +0.8
55,845 + H281DRAFT_05108 0.89 +0.2
55,845 + H281DRAFT_05108 0.89 +0.0
56,051 + +0.3
56,285 + H281DRAFT_05109 0.13 +0.3
56,359 + H281DRAFT_05109 0.18 +0.3
56,360 - H281DRAFT_05109 0.18 +0.2
56,380 + H281DRAFT_05109 0.19 +0.1
56,380 + H281DRAFT_05109 0.19 +1.1
56,497 + H281DRAFT_05109 0.26 +0.7
56,497 + H281DRAFT_05109 0.26 +0.5
56,497 + H281DRAFT_05109 0.26 +1.3
56,498 - H281DRAFT_05109 0.27 +1.3
56,498 - H281DRAFT_05109 0.27 +0.5
56,498 - H281DRAFT_05109 0.27 +0.5
56,498 - H281DRAFT_05109 0.27 +0.4
56,748 - H281DRAFT_05109 0.42 +1.0
56,801 + H281DRAFT_05109 0.46 +1.0
56,802 - H281DRAFT_05109 0.46 +0.7
56,879 - H281DRAFT_05109 0.51 +0.1
56,936 + H281DRAFT_05109 0.54 +0.5

Or see this region's nucleotide sequence