Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04703

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04702 and H281DRAFT_04703 are separated by 47 nucleotidesH281DRAFT_04703 and H281DRAFT_04704 are separated by 29 nucleotidesH281DRAFT_04704 and H281DRAFT_04705 overlap by 4 nucleotides H281DRAFT_04702: H281DRAFT_04702 - para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase, at 114,698 to 116,587 _04702 H281DRAFT_04703: H281DRAFT_04703 - ketopantoate hydroxymethyltransferase, at 116,635 to 117,450 _04703 H281DRAFT_04704: H281DRAFT_04704 - Deoxyadenosine/deoxycytidine kinase, at 117,480 to 118,160 _04704 H281DRAFT_04705: H281DRAFT_04705 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 118,157 to 118,690 _04705 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 115.700 kb on + strand, within H281DRAFT_04702at 115.851 kb on + strand, within H281DRAFT_04702at 115.852 kb on - strand, within H281DRAFT_04702at 115.852 kb on - strand, within H281DRAFT_04702at 115.964 kb on + strand, within H281DRAFT_04702at 115.964 kb on + strand, within H281DRAFT_04702at 115.964 kb on + strand, within H281DRAFT_04702at 115.965 kb on - strand, within H281DRAFT_04702at 116.038 kb on - strand, within H281DRAFT_04702at 116.134 kb on - strand, within H281DRAFT_04702at 116.250 kb on + strand, within H281DRAFT_04702at 116.251 kb on - strand, within H281DRAFT_04702at 116.251 kb on - strand, within H281DRAFT_04702at 116.251 kb on - strand, within H281DRAFT_04702at 116.329 kb on + strand, within H281DRAFT_04702at 116.329 kb on + strand, within H281DRAFT_04702at 116.330 kb on - strand, within H281DRAFT_04702at 116.330 kb on - strand, within H281DRAFT_04702at 116.330 kb on - strand, within H281DRAFT_04702at 116.383 kb on - strand, within H281DRAFT_04702at 116.476 kb on + strandat 116.476 kb on + strandat 116.477 kb on - strandat 116.517 kb on + strandat 116.518 kb on - strandat 116.518 kb on - strandat 116.518 kb on - strandat 116.518 kb on - strandat 116.688 kb on - strandat 117.444 kb on - strandat 117.626 kb on - strand, within H281DRAFT_04704at 117.640 kb on + strandat 117.641 kb on - strand, within H281DRAFT_04704at 117.664 kb on + strand, within H281DRAFT_04704at 117.665 kb on - strand, within H281DRAFT_04704at 117.965 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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115,700 + H281DRAFT_04702 0.53 +0.6
115,851 + H281DRAFT_04702 0.61 +0.8
115,852 - H281DRAFT_04702 0.61 -0.3
115,852 - H281DRAFT_04702 0.61 -0.1
115,964 + H281DRAFT_04702 0.67 -0.9
115,964 + H281DRAFT_04702 0.67 +2.2
115,964 + H281DRAFT_04702 0.67 +0.3
115,965 - H281DRAFT_04702 0.67 +0.0
116,038 - H281DRAFT_04702 0.71 +0.2
116,134 - H281DRAFT_04702 0.76 -0.3
116,250 + H281DRAFT_04702 0.82 -0.1
116,251 - H281DRAFT_04702 0.82 -0.7
116,251 - H281DRAFT_04702 0.82 +0.0
116,251 - H281DRAFT_04702 0.82 +0.5
116,329 + H281DRAFT_04702 0.86 +0.0
116,329 + H281DRAFT_04702 0.86 +0.0
116,330 - H281DRAFT_04702 0.86 +0.1
116,330 - H281DRAFT_04702 0.86 +1.4
116,330 - H281DRAFT_04702 0.86 -0.1
116,383 - H281DRAFT_04702 0.89 +0.3
116,476 + -0.3
116,476 + -0.1
116,477 - -1.4
116,517 + +0.0
116,518 - +0.2
116,518 - +0.6
116,518 - +0.2
116,518 - +0.1
116,688 - -2.3
117,444 - -0.8
117,626 - H281DRAFT_04704 0.21 +0.5
117,640 + -1.9
117,641 - H281DRAFT_04704 0.24 -0.8
117,664 + H281DRAFT_04704 0.27 -2.0
117,665 - H281DRAFT_04704 0.27 +0.8
117,965 - H281DRAFT_04704 0.71 +0.0
118,086 - H281DRAFT_04704 0.89 +1.0
118,086 - H281DRAFT_04704 0.89 -0.5
118,086 - H281DRAFT_04704 0.89 -0.5

Or see this region's nucleotide sequence