Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04251

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04249 and H281DRAFT_04250 overlap by 4 nucleotidesH281DRAFT_04250 and H281DRAFT_04251 are separated by 56 nucleotidesH281DRAFT_04251 and H281DRAFT_04252 are separated by 120 nucleotidesH281DRAFT_04252 and H281DRAFT_04253 are separated by 128 nucleotides H281DRAFT_04249: H281DRAFT_04249 - tRNA-U20-dihydrouridine synthase, at 369,070 to 370,146 _04249 H281DRAFT_04250: H281DRAFT_04250 - DNA-binding protein Fis, at 370,143 to 370,376 _04250 H281DRAFT_04251: H281DRAFT_04251 - IMP cyclohydrolase /phosphoribosylaminoimidazolecarboxamide formyltransferase, at 370,433 to 371,998 _04251 H281DRAFT_04252: H281DRAFT_04252 - hypothetical protein, at 372,119 to 372,358 _04252 H281DRAFT_04253: H281DRAFT_04253 - Holliday junction endonuclease RuvC, at 372,487 to 373,029 _04253 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1at 369.617 kb on - strand, within H281DRAFT_04249at 369.634 kb on + strand, within H281DRAFT_04249at 369.696 kb on - strand, within H281DRAFT_04249at 369.696 kb on - strand, within H281DRAFT_04249at 369.887 kb on - strand, within H281DRAFT_04249at 369.895 kb on + strand, within H281DRAFT_04249at 369.896 kb on - strand, within H281DRAFT_04249at 369.943 kb on + strand, within H281DRAFT_04249at 369.944 kb on - strand, within H281DRAFT_04249at 369.990 kb on + strand, within H281DRAFT_04249at 369.991 kb on - strand, within H281DRAFT_04249at 370.072 kb on + strandat 370.136 kb on + strandat 370.154 kb on + strandat 370.154 kb on + strandat 370.157 kb on + strandat 370.157 kb on + strandat 370.158 kb on - strandat 370.191 kb on + strand, within H281DRAFT_04250at 370.191 kb on + strand, within H281DRAFT_04250at 370.230 kb on + strand, within H281DRAFT_04250at 370.230 kb on + strand, within H281DRAFT_04250at 370.318 kb on - strandat 370.337 kb on + strand, within H281DRAFT_04250at 370.337 kb on + strand, within H281DRAFT_04250at 370.337 kb on + strand, within H281DRAFT_04250at 370.374 kb on + strandat 370.374 kb on + strandat 370.374 kb on + strandat 370.384 kb on + strandat 372.039 kb on + strandat 372.049 kb on + strandat 372.050 kb on - strandat 372.137 kb on - strandat 372.177 kb on + strand, within H281DRAFT_04252at 372.177 kb on + strand, within H281DRAFT_04252at 372.177 kb on + strand, within H281DRAFT_04252at 372.177 kb on + strand, within H281DRAFT_04252at 372.178 kb on - strand, within H281DRAFT_04252at 372.178 kb on - strand, within H281DRAFT_04252at 372.178 kb on - strand, within H281DRAFT_04252at 372.178 kb on - strand, within H281DRAFT_04252at 372.255 kb on + strand, within H281DRAFT_04252at 372.256 kb on - strand, within H281DRAFT_04252at 372.261 kb on + strandat 372.261 kb on + strand, within H281DRAFT_04252at 372.261 kb on + strand, within H281DRAFT_04252at 372.261 kb on + strand, within H281DRAFT_04252at 372.262 kb on - strandat 372.262 kb on - strand, within H281DRAFT_04252at 372.262 kb on - strand, within H281DRAFT_04252at 372.374 kb on + strandat 372.374 kb on + strandat 372.374 kb on + strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.444 kb on + strandat 372.444 kb on + strandat 372.444 kb on + strandat 372.444 kb on + strandat 372.444 kb on + strandat 372.444 kb on + strandat 372.445 kb on - strandat 372.445 kb on - strandat 372.447 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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369,617 - H281DRAFT_04249 0.51 -0.4
369,634 + H281DRAFT_04249 0.52 -1.0
369,696 - H281DRAFT_04249 0.58 +0.1
369,696 - H281DRAFT_04249 0.58 +0.5
369,887 - H281DRAFT_04249 0.76 +0.1
369,895 + H281DRAFT_04249 0.77 -0.4
369,896 - H281DRAFT_04249 0.77 -0.1
369,943 + H281DRAFT_04249 0.81 -0.7
369,944 - H281DRAFT_04249 0.81 +0.4
369,990 + H281DRAFT_04249 0.85 +0.0
369,991 - H281DRAFT_04249 0.86 +0.5
370,072 + +0.4
370,136 + +0.0
370,154 + +0.7
370,154 + +1.5
370,157 + -1.3
370,157 + +1.6
370,158 - -1.2
370,191 + H281DRAFT_04250 0.21 +1.3
370,191 + H281DRAFT_04250 0.21 -0.4
370,230 + H281DRAFT_04250 0.37 +0.6
370,230 + H281DRAFT_04250 0.37 +0.3
370,318 - -0.9
370,337 + H281DRAFT_04250 0.83 +1.7
370,337 + H281DRAFT_04250 0.83 +1.3
370,337 + H281DRAFT_04250 0.83 +0.4
370,374 + +0.7
370,374 + +0.7
370,374 + +0.2
370,384 + +0.2
372,039 + -0.7
372,049 + +0.2
372,050 - -0.0
372,137 - +0.2
372,177 + H281DRAFT_04252 0.24 +0.3
372,177 + H281DRAFT_04252 0.24 +0.1
372,177 + H281DRAFT_04252 0.24 +0.2
372,177 + H281DRAFT_04252 0.24 -0.7
372,178 - H281DRAFT_04252 0.25 -0.2
372,178 - H281DRAFT_04252 0.25 -0.4
372,178 - H281DRAFT_04252 0.25 -0.1
372,178 - H281DRAFT_04252 0.25 -0.0
372,255 + H281DRAFT_04252 0.57 +0.0
372,256 - H281DRAFT_04252 0.57 -0.6
372,261 + +0.4
372,261 + H281DRAFT_04252 0.59 +0.0
372,261 + H281DRAFT_04252 0.59 +0.4
372,261 + H281DRAFT_04252 0.59 +1.1
372,262 - -1.5
372,262 - H281DRAFT_04252 0.60 +0.4
372,262 - H281DRAFT_04252 0.60 -0.3
372,374 + -0.7
372,374 + +0.4
372,374 + +0.7
372,375 - +0.0
372,375 - -0.4
372,375 - +0.6
372,375 - -0.1
372,444 + -1.4
372,444 + +1.0
372,444 + +1.3
372,444 + +0.3
372,444 + +0.4
372,444 + -2.2
372,445 - -0.8
372,445 - +0.4
372,447 + +0.1

Or see this region's nucleotide sequence