Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04117

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04116 and H281DRAFT_04117 are separated by 504 nucleotidesH281DRAFT_04117 and H281DRAFT_04118 are separated by 183 nucleotidesH281DRAFT_04118 and H281DRAFT_04119 are separated by 447 nucleotides H281DRAFT_04116: H281DRAFT_04116 - putative peptidoglycan lipid II flippase, at 226,500 to 228,050 _04116 H281DRAFT_04117: H281DRAFT_04117 - SSU ribosomal protein S20P, at 228,555 to 228,833 _04117 H281DRAFT_04118: H281DRAFT_04118 - Protein of unknown function (DUF3579), at 229,017 to 229,364 _04118 H281DRAFT_04119: H281DRAFT_04119 - ornithine carbamoyltransferase, at 229,812 to 230,741 _04119 Position (kb) 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1at 228.060 kb on - strandat 228.060 kb on - strandat 228.060 kb on - strandat 228.063 kb on - strandat 228.063 kb on - strandat 228.063 kb on - strandat 228.063 kb on - strandat 228.064 kb on + strandat 228.064 kb on + strandat 228.065 kb on - strandat 228.065 kb on - strandat 228.065 kb on - strandat 228.065 kb on - strandat 228.065 kb on - strandat 228.859 kb on + strandat 228.860 kb on - strandat 228.924 kb on + strandat 229.373 kb on - strandat 229.556 kb on - strandat 229.619 kb on - strandat 229.750 kb on - strandat 229.756 kb on + strandat 229.757 kb on - strandat 229.802 kb on + strandat 229.802 kb on + strandat 229.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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228,060 - +0.4
228,060 - -0.5
228,060 - -0.1
228,063 - -2.3
228,063 - +1.1
228,063 - -0.2
228,063 - -0.0
228,064 + +0.6
228,064 + -0.1
228,065 - -1.1
228,065 - -0.3
228,065 - -1.0
228,065 - +0.1
228,065 - -1.5
228,859 + -1.6
228,860 - +1.5
228,924 + +0.6
229,373 - -1.3
229,556 - -1.1
229,619 - -0.8
229,750 - -3.3
229,756 + +1.0
229,757 - -1.2
229,802 + -0.4
229,802 + -0.1
229,802 + +0.5

Or see this region's nucleotide sequence