Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02044

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02043 and H281DRAFT_02044 are separated by 162 nucleotidesH281DRAFT_02044 and H281DRAFT_02045 are separated by 317 nucleotides H281DRAFT_02043: H281DRAFT_02043 - putative spermidine/putrescine transport system substrate-binding protein, at 166,521 to 167,633 _02043 H281DRAFT_02044: H281DRAFT_02044 - glycerophosphoryl diester phosphodiesterase, at 167,796 to 168,560 _02044 H281DRAFT_02045: H281DRAFT_02045 - transcriptional regulator, DeoR family, at 168,878 to 169,648 _02045 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1at 166.807 kb on + strand, within H281DRAFT_02043at 166.807 kb on + strand, within H281DRAFT_02043at 166.807 kb on + strand, within H281DRAFT_02043at 166.808 kb on - strand, within H281DRAFT_02043at 166.808 kb on - strandat 166.808 kb on - strand, within H281DRAFT_02043at 166.894 kb on + strand, within H281DRAFT_02043at 166.895 kb on - strand, within H281DRAFT_02043at 167.119 kb on + strand, within H281DRAFT_02043at 167.120 kb on - strand, within H281DRAFT_02043at 167.203 kb on + strand, within H281DRAFT_02043at 167.204 kb on - strand, within H281DRAFT_02043at 167.204 kb on - strand, within H281DRAFT_02043at 167.213 kb on - strand, within H281DRAFT_02043at 167.262 kb on - strand, within H281DRAFT_02043at 167.262 kb on - strand, within H281DRAFT_02043at 167.271 kb on - strand, within H281DRAFT_02043at 167.271 kb on - strand, within H281DRAFT_02043at 167.271 kb on - strand, within H281DRAFT_02043at 167.434 kb on + strand, within H281DRAFT_02043at 167.435 kb on - strand, within H281DRAFT_02043at 167.435 kb on - strand, within H281DRAFT_02043at 167.502 kb on - strand, within H281DRAFT_02043at 167.502 kb on - strand, within H281DRAFT_02043at 167.616 kb on + strandat 167.662 kb on + strandat 167.662 kb on + strandat 167.663 kb on - strandat 167.699 kb on + strandat 167.700 kb on - strandat 167.819 kb on + strandat 167.819 kb on + strandat 167.820 kb on - strandat 168.281 kb on - strand, within H281DRAFT_02044at 168.320 kb on + strand, within H281DRAFT_02044at 168.320 kb on + strand, within H281DRAFT_02044at 168.321 kb on - strand, within H281DRAFT_02044at 168.321 kb on - strand, within H281DRAFT_02044at 168.321 kb on - strand, within H281DRAFT_02044at 168.537 kb on + strandat 168.537 kb on + strandat 168.537 kb on + strandat 168.538 kb on - strandat 168.538 kb on - strandat 168.645 kb on - strandat 168.735 kb on + strandat 168.784 kb on + strandat 168.785 kb on - strandat 168.836 kb on + strandat 168.836 kb on + strandat 168.906 kb on + strandat 168.906 kb on + strandat 169.224 kb on + strand, within H281DRAFT_02045at 169.224 kb on + strand, within H281DRAFT_02045at 169.508 kb on + strand, within H281DRAFT_02045at 169.542 kb on - strand, within H281DRAFT_02045at 169.542 kb on - strand, within H281DRAFT_02045

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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166,807 + H281DRAFT_02043 0.26 +0.3
166,807 + H281DRAFT_02043 0.26 -0.4
166,807 + H281DRAFT_02043 0.26 +0.2
166,808 - H281DRAFT_02043 0.26 -0.4
166,808 - +0.7
166,808 - H281DRAFT_02043 0.26 +0.3
166,894 + H281DRAFT_02043 0.34 -1.7
166,895 - H281DRAFT_02043 0.34 -0.0
167,119 + H281DRAFT_02043 0.54 +0.7
167,120 - H281DRAFT_02043 0.54 +0.5
167,203 + H281DRAFT_02043 0.61 -0.5
167,204 - H281DRAFT_02043 0.61 -0.5
167,204 - H281DRAFT_02043 0.61 +0.0
167,213 - H281DRAFT_02043 0.62 +0.4
167,262 - H281DRAFT_02043 0.67 +0.5
167,262 - H281DRAFT_02043 0.67 +1.0
167,271 - H281DRAFT_02043 0.67 +0.7
167,271 - H281DRAFT_02043 0.67 -2.3
167,271 - H281DRAFT_02043 0.67 -0.6
167,434 + H281DRAFT_02043 0.82 -0.3
167,435 - H281DRAFT_02043 0.82 +0.4
167,435 - H281DRAFT_02043 0.82 -0.9
167,502 - H281DRAFT_02043 0.88 -0.1
167,502 - H281DRAFT_02043 0.88 +0.7
167,616 + +0.5
167,662 + +0.2
167,662 + +0.2
167,663 - -0.8
167,699 + +0.5
167,700 - -0.9
167,819 + -0.7
167,819 + +0.4
167,820 - -1.1
168,281 - H281DRAFT_02044 0.63 -0.3
168,320 + H281DRAFT_02044 0.68 -1.2
168,320 + H281DRAFT_02044 0.68 -0.5
168,321 - H281DRAFT_02044 0.69 -0.2
168,321 - H281DRAFT_02044 0.69 +0.3
168,321 - H281DRAFT_02044 0.69 -1.0
168,537 + -0.1
168,537 + +0.7
168,537 + -0.9
168,538 - -0.2
168,538 - -0.2
168,645 - -0.2
168,735 + +0.0
168,784 + -0.8
168,785 - -0.6
168,836 + +0.6
168,836 + -0.9
168,906 + -0.4
168,906 + -0.5
169,224 + H281DRAFT_02045 0.45 -1.1
169,224 + H281DRAFT_02045 0.45 +0.2
169,508 + H281DRAFT_02045 0.82 -1.6
169,542 - H281DRAFT_02045 0.86 -0.4
169,542 - H281DRAFT_02045 0.86 -0.3

Or see this region's nucleotide sequence