Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01993

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01991 and H281DRAFT_01992 are separated by 31 nucleotidesH281DRAFT_01992 and H281DRAFT_01993 are separated by 291 nucleotidesH281DRAFT_01993 and H281DRAFT_01994 are separated by 43 nucleotides H281DRAFT_01991: H281DRAFT_01991 - Protein of unknown function (DUF2970), at 109,580 to 109,789 _01991 H281DRAFT_01992: H281DRAFT_01992 - cytochrome c oxidase assembly protein subunit 11, at 109,821 to 110,435 _01992 H281DRAFT_01993: H281DRAFT_01993 - cytochrome c oxidase subunit 1, at 110,727 to 112,340 _01993 H281DRAFT_01994: H281DRAFT_01994 - cytochrome c oxidase subunit 2, at 112,384 to 114,018 _01994 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 109.916 kb on - strand, within H281DRAFT_01992at 110.015 kb on + strand, within H281DRAFT_01992at 110.044 kb on + strand, within H281DRAFT_01992at 110.045 kb on - strand, within H281DRAFT_01992at 110.045 kb on - strand, within H281DRAFT_01992at 110.069 kb on - strand, within H281DRAFT_01992at 110.069 kb on - strand, within H281DRAFT_01992at 110.069 kb on - strand, within H281DRAFT_01992at 110.122 kb on + strand, within H281DRAFT_01992at 110.122 kb on + strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.123 kb on - strand, within H281DRAFT_01992at 110.246 kb on + strand, within H281DRAFT_01992at 110.247 kb on - strand, within H281DRAFT_01992at 110.320 kb on + strand, within H281DRAFT_01992at 110.321 kb on - strand, within H281DRAFT_01992at 110.461 kb on + strandat 110.462 kb on - strandat 110.462 kb on - strandat 110.718 kb on - strandat 110.729 kb on - strandat 110.881 kb on + strandat 110.881 kb on + strandat 110.881 kb on + strandat 110.882 kb on - strandat 111.067 kb on + strand, within H281DRAFT_01993at 111.067 kb on + strand, within H281DRAFT_01993at 111.067 kb on + strand, within H281DRAFT_01993at 111.067 kb on + strand, within H281DRAFT_01993at 111.068 kb on - strand, within H281DRAFT_01993at 111.097 kb on + strand, within H281DRAFT_01993at 111.100 kb on + strand, within H281DRAFT_01993at 111.100 kb on + strand, within H281DRAFT_01993at 111.145 kb on + strandat 111.146 kb on - strand, within H281DRAFT_01993at 111.146 kb on - strand, within H281DRAFT_01993at 111.169 kb on + strand, within H281DRAFT_01993at 111.170 kb on - strand, within H281DRAFT_01993at 111.170 kb on - strand, within H281DRAFT_01993at 111.174 kb on - strand, within H281DRAFT_01993at 111.305 kb on + strand, within H281DRAFT_01993at 111.361 kb on + strand, within H281DRAFT_01993at 111.470 kb on + strand, within H281DRAFT_01993at 111.471 kb on - strand, within H281DRAFT_01993at 111.547 kb on + strand, within H281DRAFT_01993at 111.547 kb on + strand, within H281DRAFT_01993at 111.547 kb on + strand, within H281DRAFT_01993at 111.548 kb on - strand, within H281DRAFT_01993at 111.578 kb on + strand, within H281DRAFT_01993at 111.579 kb on - strand, within H281DRAFT_01993at 111.579 kb on - strand, within H281DRAFT_01993at 111.579 kb on - strand, within H281DRAFT_01993at 111.586 kb on + strand, within H281DRAFT_01993at 111.587 kb on - strand, within H281DRAFT_01993at 111.701 kb on - strand, within H281DRAFT_01993at 111.883 kb on + strand, within H281DRAFT_01993at 111.883 kb on + strand, within H281DRAFT_01993at 111.884 kb on - strand, within H281DRAFT_01993at 112.213 kb on + strandat 112.214 kb on - strandat 112.220 kb on + strandat 112.335 kb on - strandat 112.361 kb on - strandat 112.465 kb on - strandat 112.468 kb on - strandat 112.468 kb on - strandat 112.468 kb on - strandat 112.468 kb on - strandat 112.679 kb on + strand, within H281DRAFT_01994at 112.909 kb on - strand, within H281DRAFT_01994at 112.940 kb on - strand, within H281DRAFT_01994at 112.953 kb on + strand, within H281DRAFT_01994at 112.953 kb on + strand, within H281DRAFT_01994at 112.953 kb on + strand, within H281DRAFT_01994at 112.954 kb on - strand, within H281DRAFT_01994at 112.954 kb on - strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.106 kb on - strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.144 kb on + strand, within H281DRAFT_01994at 113.145 kb on - strand, within H281DRAFT_01994

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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109,916 - H281DRAFT_01992 0.15 +0.7
110,015 + H281DRAFT_01992 0.32 +0.7
110,044 + H281DRAFT_01992 0.36 +0.9
110,045 - H281DRAFT_01992 0.36 +0.6
110,045 - H281DRAFT_01992 0.36 -0.4
110,069 - H281DRAFT_01992 0.40 +0.5
110,069 - H281DRAFT_01992 0.40 -0.0
110,069 - H281DRAFT_01992 0.40 +1.2
110,122 + H281DRAFT_01992 0.49 +0.3
110,122 + H281DRAFT_01992 0.49 +1.0
110,123 - H281DRAFT_01992 0.49 +0.0
110,123 - H281DRAFT_01992 0.49 +0.7
110,123 - H281DRAFT_01992 0.49 -0.3
110,123 - H281DRAFT_01992 0.49 +1.6
110,123 - H281DRAFT_01992 0.49 +0.8
110,123 - H281DRAFT_01992 0.49 -1.3
110,123 - H281DRAFT_01992 0.49 +1.1
110,246 + H281DRAFT_01992 0.69 +1.1
110,247 - H281DRAFT_01992 0.69 +1.0
110,320 + H281DRAFT_01992 0.81 +1.2
110,321 - H281DRAFT_01992 0.81 +0.3
110,461 + +0.8
110,462 - +0.8
110,462 - +1.2
110,718 - +1.3
110,729 - +0.8
110,881 + +1.0
110,881 + +0.8
110,881 + +0.3
110,882 - +0.2
111,067 + H281DRAFT_01993 0.21 +1.0
111,067 + H281DRAFT_01993 0.21 +1.5
111,067 + H281DRAFT_01993 0.21 +0.6
111,067 + H281DRAFT_01993 0.21 -0.4
111,068 - H281DRAFT_01993 0.21 +0.5
111,097 + H281DRAFT_01993 0.23 +1.3
111,100 + H281DRAFT_01993 0.23 +1.0
111,100 + H281DRAFT_01993 0.23 +1.2
111,145 + +1.1
111,146 - H281DRAFT_01993 0.26 +1.0
111,146 - H281DRAFT_01993 0.26 +0.8
111,169 + H281DRAFT_01993 0.27 +0.1
111,170 - H281DRAFT_01993 0.27 +1.0
111,170 - H281DRAFT_01993 0.27 +0.9
111,174 - H281DRAFT_01993 0.28 +0.7
111,305 + H281DRAFT_01993 0.36 +0.6
111,361 + H281DRAFT_01993 0.39 +0.9
111,470 + H281DRAFT_01993 0.46 +0.8
111,471 - H281DRAFT_01993 0.46 +0.9
111,547 + H281DRAFT_01993 0.51 +1.2
111,547 + H281DRAFT_01993 0.51 +1.2
111,547 + H281DRAFT_01993 0.51 +0.8
111,548 - H281DRAFT_01993 0.51 +1.8
111,578 + H281DRAFT_01993 0.53 +0.8
111,579 - H281DRAFT_01993 0.53 -0.1
111,579 - H281DRAFT_01993 0.53 +0.9
111,579 - H281DRAFT_01993 0.53 +0.7
111,586 + H281DRAFT_01993 0.53 +1.2
111,587 - H281DRAFT_01993 0.53 +0.4
111,701 - H281DRAFT_01993 0.60 +0.8
111,883 + H281DRAFT_01993 0.72 +0.7
111,883 + H281DRAFT_01993 0.72 +0.3
111,884 - H281DRAFT_01993 0.72 +2.5
112,213 + +1.6
112,214 - +0.7
112,220 + +1.1
112,335 - +1.1
112,361 - -0.4
112,465 - +0.5
112,468 - +0.3
112,468 - -1.9
112,468 - +0.1
112,468 - +0.1
112,679 + H281DRAFT_01994 0.18 +0.5
112,909 - H281DRAFT_01994 0.32 +1.0
112,940 - H281DRAFT_01994 0.34 +1.4
112,953 + H281DRAFT_01994 0.35 +0.4
112,953 + H281DRAFT_01994 0.35 +0.8
112,953 + H281DRAFT_01994 0.35 +0.4
112,954 - H281DRAFT_01994 0.35 +1.1
112,954 - H281DRAFT_01994 0.35 +1.2
113,105 + H281DRAFT_01994 0.44 +0.5
113,105 + H281DRAFT_01994 0.44 +0.9
113,105 + H281DRAFT_01994 0.44 +1.6
113,106 - H281DRAFT_01994 0.44 +1.4
113,142 + H281DRAFT_01994 0.46 +1.2
113,142 + H281DRAFT_01994 0.46 +1.5
113,142 + H281DRAFT_01994 0.46 +2.2
113,143 - H281DRAFT_01994 0.46 +0.9
113,143 - H281DRAFT_01994 0.46 +0.9
113,143 - H281DRAFT_01994 0.46 +1.2
113,144 + H281DRAFT_01994 0.46 +1.2
113,145 - H281DRAFT_01994 0.47 -0.8

Or see this region's nucleotide sequence