Experiment: Phenylacetic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01509 and H281DRAFT_01510 are separated by 13 nucleotides H281DRAFT_01510 and H281DRAFT_01511 are separated by 86 nucleotides H281DRAFT_01511 and H281DRAFT_01512 are separated by 216 nucleotides
H281DRAFT_01509: H281DRAFT_01509 - Uncharacterized conserved protein YgbK, DUF1537 family, at 379,197 to 380,507
_01509
H281DRAFT_01510: H281DRAFT_01510 - 3-hydroxyisobutyrate dehydrogenase, at 380,521 to 381,411
_01510
H281DRAFT_01511: H281DRAFT_01511 - transcriptional regulator, GntR family, at 381,498 to 382,202
_01511
H281DRAFT_01512: H281DRAFT_01512 - transcriptional regulator, IclR family, at 382,419 to 383,243
_01512
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1
2 at 380.737 kb on + strand, within H281DRAFT_01510 at 380.738 kb on - strand, within H281DRAFT_01510 at 380.738 kb on - strand, within H281DRAFT_01510 at 380.738 kb on - strand, within H281DRAFT_01510 at 380.798 kb on + strand, within H281DRAFT_01510 at 380.799 kb on - strand, within H281DRAFT_01510 at 381.422 kb on + strand at 381.688 kb on + strand, within H281DRAFT_01511 at 381.688 kb on + strand, within H281DRAFT_01511 at 381.688 kb on + strand, within H281DRAFT_01511 at 381.689 kb on - strand, within H281DRAFT_01511 at 382.146 kb on - strand at 382.319 kb on + strand at 382.319 kb on + strand at 382.566 kb on - strand, within H281DRAFT_01512 at 382.795 kb on + strand, within H281DRAFT_01512 at 383.133 kb on - strand, within H281DRAFT_01512
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic (C) remove 380,737 + H281DRAFT_01510 0.24 +0.3 380,738 - H281DRAFT_01510 0.24 -0.1 380,738 - H281DRAFT_01510 0.24 -0.1 380,738 - H281DRAFT_01510 0.24 -0.0 380,798 + H281DRAFT_01510 0.31 -0.2 380,799 - H281DRAFT_01510 0.31 -0.0 381,422 + +0.4 381,688 + H281DRAFT_01511 0.27 +1.0 381,688 + H281DRAFT_01511 0.27 +0.4 381,688 + H281DRAFT_01511 0.27 +2.0 381,689 - H281DRAFT_01511 0.27 +0.7 382,146 - -0.5 382,319 + -0.6 382,319 + -0.1 382,566 - H281DRAFT_01512 0.18 -0.9 382,795 + H281DRAFT_01512 0.46 -0.0 383,133 - H281DRAFT_01512 0.87 +0.1
Or see this region's nucleotide sequence