Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00916

Experiment: Phenylacetic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00915 and H281DRAFT_00916 are separated by 183 nucleotidesH281DRAFT_00916 and H281DRAFT_00917 are separated by 126 nucleotides H281DRAFT_00915: H281DRAFT_00915 - fatty-acyl-CoA synthase, at 1,016,948 to 1,018,633 _00915 H281DRAFT_00916: H281DRAFT_00916 - short chain enoyl-CoA hydratase /3-hydroxyacyl-CoA dehydrogenase, at 1,018,817 to 1,020,901 _00916 H281DRAFT_00917: H281DRAFT_00917 - acetyl-CoA C-acetyltransferase, at 1,021,028 to 1,022,206 _00917 Position (kb) 1018 1019 1020 1021Strain fitness (log2 ratio) -1 0 1at 1017.908 kb on + strand, within H281DRAFT_00915at 1017.915 kb on + strand, within H281DRAFT_00915at 1017.915 kb on + strand, within H281DRAFT_00915at 1018.046 kb on + strand, within H281DRAFT_00915at 1018.058 kb on - strand, within H281DRAFT_00915at 1018.121 kb on + strand, within H281DRAFT_00915at 1018.121 kb on + strand, within H281DRAFT_00915at 1018.122 kb on - strand, within H281DRAFT_00915at 1018.214 kb on - strand, within H281DRAFT_00915at 1018.442 kb on + strand, within H281DRAFT_00915at 1018.829 kb on + strandat 1019.139 kb on + strand, within H281DRAFT_00916at 1019.471 kb on - strand, within H281DRAFT_00916at 1019.471 kb on - strand, within H281DRAFT_00916at 1019.678 kb on - strand, within H281DRAFT_00916at 1020.272 kb on + strand, within H281DRAFT_00916at 1020.272 kb on + strand, within H281DRAFT_00916at 1020.422 kb on + strand, within H281DRAFT_00916at 1020.579 kb on - strandat 1020.719 kb on + strandat 1020.720 kb on - strandat 1021.010 kb on + strandat 1021.011 kb on - strandat 1021.041 kb on + strandat 1021.048 kb on - strandat 1021.129 kb on - strandat 1021.182 kb on + strand, within H281DRAFT_00917at 1021.182 kb on + strand, within H281DRAFT_00917at 1021.182 kb on + strand, within H281DRAFT_00917at 1021.502 kb on + strand, within H281DRAFT_00917at 1021.650 kb on - strand, within H281DRAFT_00917

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
remove
1,017,908 + H281DRAFT_00915 0.57 -0.1
1,017,915 + H281DRAFT_00915 0.57 +0.3
1,017,915 + H281DRAFT_00915 0.57 -0.6
1,018,046 + H281DRAFT_00915 0.65 -0.1
1,018,058 - H281DRAFT_00915 0.66 -0.1
1,018,121 + H281DRAFT_00915 0.70 +0.2
1,018,121 + H281DRAFT_00915 0.70 -0.5
1,018,122 - H281DRAFT_00915 0.70 -0.5
1,018,214 - H281DRAFT_00915 0.75 -0.3
1,018,442 + H281DRAFT_00915 0.89 -1.2
1,018,829 + -0.1
1,019,139 + H281DRAFT_00916 0.15 -1.1
1,019,471 - H281DRAFT_00916 0.31 +0.3
1,019,471 - H281DRAFT_00916 0.31 +0.3
1,019,678 - H281DRAFT_00916 0.41 -0.7
1,020,272 + H281DRAFT_00916 0.70 -0.5
1,020,272 + H281DRAFT_00916 0.70 -0.3
1,020,422 + H281DRAFT_00916 0.77 +0.5
1,020,579 - -0.8
1,020,719 + +0.2
1,020,720 - +0.6
1,021,010 + +0.3
1,021,011 - +0.3
1,021,041 + +0.5
1,021,048 - -0.4
1,021,129 - +0.1
1,021,182 + H281DRAFT_00917 0.13 +0.2
1,021,182 + H281DRAFT_00917 0.13 +0.3
1,021,182 + H281DRAFT_00917 0.13 +0.6
1,021,502 + H281DRAFT_00917 0.40 -0.2
1,021,650 - H281DRAFT_00917 0.53 +0.8

Or see this region's nucleotide sequence